PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013587903.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BBR-BPC
Protein Properties Length: 340aa    MW: 38057.2 Da    PI: 9.5068
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013587903.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind388.69.2e-11913401301
       GAGA_bind   1 mdddgsre..rnkgyyepaaslken.lglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla 92 
                     mdd g+r+  r+k+   ++  ++++   +q+ms+iaerda+i+ernla+se+k+avaerdmaflqrd+a+aern+a++erd++l al+++ens+a
  XP_013587903.1   1 MDDGGHRDngRHKTPQGQQWMMQHQpSMKQVMSIIAERDAAIQERNLAISERKSAVAERDMAFLQRDTAIAERNNAIMERDSALSALQYRENSMA 95 
                     999999988888884444434443313469***************************************************************99 PP

       GAGA_bind  93 .........salpvgvqvlsgtksidslqqlse...pqledsavelreeeklealpieeaaeeakekkkkkk.rqrakkpkekkakkkkkkseks 174
                               ++p+g+q+ +g+k+i++ q++++    ql+d+a++  e+++++ lp++  +e+a +++k+k+ ++r k+pk+++++ ++k+++k+
  XP_013587903.1  96 tpsavsnmaAVCPPGCQMPRGVKHIHHPQMHHQhhmLQLSDHAYD--ESREMDGLPTSPPPETALDSAKPKRgGKRVKDPKATTKTTANKRGPKN 188
                     9*****99999*******************655568899999999..44445566666677776666655542799******************* PP

       GAGA_bind 175 kkkvkkesader.......................skaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLP 245
                      +kvkke++d+                        sk+++ks+++ +ln+v +De+t+P+PvCsCtG lrqCYkWGnGGWqS+CCtttiS+yPLP
  XP_013587903.1 189 PRKVKKENEDDLtkimfvktldygeeetsklvltgSKSDWKSQEMvGLNQVVYDETTMPPPVCSCTGDLRQCYKWGNGGWQSSCCTTTISMYPLP 283
                     ******99883358*******************************88************************************************ PP

       GAGA_bind 246 vstkrrgaRiagrKmSqgafkklLekLaaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301
                     + +++r+aR++grKmS++af+klL++LaaeG +dlsnpvDLkdhWAkHGtn+++ti+
  XP_013587903.1 284 ALPNKRHARVGGRKMSGSAFNKLLSRLAAEGhHDLSNPVDLKDHWAKHGTNRYITIK 340
                     *******************************88***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012263.0E-1591340IPR010409GAGA-binding transcriptional activator
PfamPF062172.0E-1021340IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDDGGHRDNG RHKTPQGQQW MMQHQPSMKQ VMSIIAERDA AIQERNLAIS ERKSAVAERD  60
MAFLQRDTAI AERNNAIMER DSALSALQYR ENSMATPSAV SNMAAVCPPG CQMPRGVKHI  120
HHPQMHHQHH MLQLSDHAYD ESREMDGLPT SPPPETALDS AKPKRGGKRV KDPKATTKTT  180
ANKRGPKNPR KVKKENEDDL TKIMFVKTLD YGEEETSKLV LTGSKSDWKS QEMVGLNQVV  240
YDETTMPPPV CSCTGDLRQC YKWGNGGWQS SCCTTTISMY PLPALPNKRH ARVGGRKMSG  300
SAFNKLLSRL AAEGHHDLSN PVDLKDHWAK HGTNRYITIK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013587903.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5295140.0EF529514.1 Brassica rapa subsp. pekinensis GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013587903.10.0PREDICTED: protein BASIC PENTACYSTEINE6 isoform X1
RefseqXP_022559665.10.0protein BASIC PENTACYSTEINE6-like isoform X1
SwissprotQ8L9990.0BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A3P6GS550.0A0A3P6GS55_BRAOL; Uncharacterized protein
STRINGBo6g076850.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61692647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.10.0basic pentacysteine 6