PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013587796.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 281aa MW: 31233.2 Da PI: 9.5615 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 48.8 | 1.5e-15 | 211 | 253 | 5 | 47 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 ++++r++kNRe+A rsR+RK+a++ eLe kv Le+eN++L+ XP_013587796.1 211 RKQKRMIKNRESAARSRARKQAYTHELEIKVSRLEEENERLRR 253 689**************************************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 7.8E-14 | 204 | 254 | No hit | No description |
SMART | SM00338 | 2.3E-12 | 207 | 279 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.312 | 209 | 254 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 2.76E-23 | 211 | 265 | No hit | No description |
SuperFamily | SSF57959 | 2.06E-10 | 211 | 256 | No hit | No description |
Pfam | PF00170 | 1.9E-12 | 211 | 254 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 214 | 229 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MDSQRVIVED PKSQSLNRQG SSLYSLTLDE VQTHLGSSGK SLGSMNLDEL LKSVCSVEPN 60 QPPSTAVNEG LSRQGSLTLP RDLSKKTVEE VWKDIQQDKN GGSAHERRDK QHTLGEMTLE 120 YLLLKAGVVT ETIPGSNHDD PGGAGLAQVG PWVQYHQLPS MTQPQSFMPY PVADMQAMVS 180 QASLMGGLSD TQTPGRKRVA SGEVVEKTVE RKQKRMIKNR ESAARSRARK QAYTHELEIK 240 VSRLEEENER LRRQKEVEKI LPSAPPPDPK RQLRRTSSAP F |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}. | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00409 | DAP | Transfer from AT3G56850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013587796.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX122898 | 0.0 | JX122898.1 Brassica napus ABA-responsive element binding factor AREB3.1 (AREB3.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013587796.1 | 0.0 | PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X2 | ||||
Swissprot | Q9LES3 | 1e-178 | AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2 | ||||
TrEMBL | A0A0D3CU69 | 0.0 | A0A0D3CU69_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g072380.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56850.1 | 1e-171 | ABA-responsive element binding protein 3 |
Publications ? help Back to Top | |||
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