PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013587747.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 365aa    MW: 41349.6 Da    PI: 10.2511
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013587747.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.82.7e-20211011098
                     HHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  10 vlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      ++s+ l++p kf+++h +g k+e+kt++l++ +s r+W+vk+  ++++    lt+GWkeF+ka++L++gD+v+F+ +g++ f  +v++f 
  XP_013587747.1  21 GFQSH-LIIPVKFFSKHiEG-KHEGKTVKLRSdSSDRTWKVKM--EGHK----LTEGWKEFAKAHDLQVGDVVIFRQEGDMLF--HVTAFG 101
                     45555.9**********644.56789*****96777*******..6666....***********************7777777..777775 PP
2B354.91.6e-17148240297
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     f +++++ +l++g + +p +fa+++g +k +  +++l++++g+sWe ++  +k+sg++++ + W+ F+ a +L++gD++ Fkl + +++++v+++
  XP_013587747.1 148 FNQTVTAGSLSNGAVGVPLDFARRNGFNKGG-HKVVLMNQEGESWESEV-KCKRSGQVFICRSWRIFCTASRLEVGDSLQFKLLQ-NTETPVFQL 239
                     5677899999***************999755.5****************.588888999999********************998.555578876 PP

                     E CS
              B3  97 f 97 
                      
  XP_013587747.1 240 S 240
                     5 PP
3B352.49.4e-17248342299
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     ++++ ++++l+ g  +lp +f+++++++   + +++l d++  +W++kl+ + +s  ++ +kGWk+F+ an++ +g++++++l++r ++ +++k+
  XP_013587747.1 248 VTITPSASNLEIGKQYLPVHFTRANKLDR--PGKIVLVDKDKVEWSMKLKADIRSTYIMGGKGWKSFCAANEVVAGESLTLELIRR-GRIPLLKF 339
                     555556677888999**********9995..558***************99999999999************************95.55588888 PP

                     E-S CS
              B3  97 frk 99 
                     ++k
  XP_013587747.1 340 CSK 342
                     876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-257105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-249108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.09911103IPR003340B3 DNA binding domain
CDDcd100175.76E-2112100No hitNo description
SMARTSM010192.0E-2614103IPR003340B3 DNA binding domain
PfamPF023624.5E-152397IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-17140239IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.71E-17143239IPR015300DNA-binding pseudobarrel domain
CDDcd100171.33E-14147239No hitNo description
PROSITE profilePS5086312.689147242IPR003340B3 DNA binding domain
SMARTSM010194.0E-18148243IPR003340B3 DNA binding domain
PfamPF023628.1E-17148240IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-17245342IPR015300DNA-binding pseudobarrel domain
CDDcd100176.86E-15245341No hitNo description
Gene3DG3DSA:2.40.330.103.1E-17247342IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.126247342IPR003340B3 DNA binding domain
SMARTSM010193.2E-27247343IPR003340B3 DNA binding domain
PfamPF023625.1E-16247342IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MENASLFSPA NPHFFQPLLT GFQSHLIIPV KFFSKHIEGK HEGKTVKLRS DSSDRTWKVK  60
MEGHKLTEGW KEFAKAHDLQ VGDVVIFRQE GDMLFHVTAF GTSCCELQYV LSGSHDVKEE  120
SDVIGIMKSS FRESSRREKE SSPSLTCFNQ TVTAGSLSNG AVGVPLDFAR RNGFNKGGHK  180
VVLMNQEGES WESEVKCKRS GQVFICRSWR IFCTASRLEV GDSLQFKLLQ NTETPVFQLS  240
SHLKPRFVTI TPSASNLEIG KQYLPVHFTR ANKLDRPGKI VLVDKDKVEW SMKLKADIRS  300
TYIMGGKGWK SFCAANEVVA GESLTLELIR RGRIPLLKFC SKMEQPPFKT KTRERKRTRV  360
QRLSQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013587747.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892171e-105AC189217.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010F06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013587747.10.0PREDICTED: B3 domain-containing protein REM8-like
SwissprotQ8H2D11e-155REM8_ARATH; B3 domain-containing protein REM8
TrEMBLA0A0D3A2T30.0A0A0D3A2T3_BRAOL; Uncharacterized protein
STRINGBo1g011080.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.11e-148B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]