PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013587729.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 350aa MW: 39006.7 Da PI: 5.7265 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.8 | 1e-32 | 154 | 208 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fv+a++qLGGse+AtPk++l+l++ +gLt++hvkSHLQkYR+ XP_013587729.1 154 KQRMRWTPELHEAFVDAINQLGGSERATPKAVLKLINSPGLTIYHVKSHLQKYRT 208 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.862 | 151 | 211 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.63E-17 | 152 | 208 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.1E-30 | 153 | 210 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.5E-23 | 154 | 208 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.4E-10 | 156 | 207 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.9E-22 | 242 | 288 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MNNPVPCQVF PLASGGTSSG YCNGTYVSSH ERSSSQTRQS VETQPLPVTN QPQGQRDMSW 60 PEDQLQGFFD FPPQAESSRA KSEWPDWANQ MISVDDGLEP NWSELLGDPN VLNQDSKIPT 120 PSCDIARQEI VVSTQHQVDP SSAKSPQASS MTSKQRMRWT PELHEAFVDA INQLGGSERA 180 TPKAVLKLIN SPGLTIYHVK SHLQKYRTAR YKPEISVDTE KPPLKTLKTI EDIKSLDLKT 240 SIEITEALRL QMEVQKKLHE QLEVQRTLQL QIEEQGRYLQ MMIEKQQQKM QEKKIGSSSG 300 TSTMPEADTS SAPSPDLSQV SITERLQSGS GTLDQSGSPS LATKKRVRED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-28 | 154 | 212 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-28 | 154 | 212 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-28 | 154 | 212 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-28 | 154 | 212 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-28 | 154 | 212 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-28 | 154 | 212 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-28 | 154 | 212 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-28 | 154 | 212 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013587729.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013587725.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1 isoform X3 | ||||
Refseq | XP_013587727.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1 isoform X3 | ||||
Refseq | XP_013587728.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1 isoform X3 | ||||
Refseq | XP_013587729.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1 isoform X3 | ||||
Refseq | XP_013587730.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1 isoform X3 | ||||
Swissprot | F4J3P7 | 1e-172 | PHLD_ARATH; Myb family transcription factor PHL13 | ||||
TrEMBL | A0A0D3CMT9 | 0.0 | A0A0D3CMT9_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g148190.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04450.2 | 1e-164 | G2-like family protein |
Publications ? help Back to Top | |||
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