PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013587729.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 350aa    MW: 39006.7 Da    PI: 5.7265
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013587729.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.81e-32154208155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rWtpeLHe+Fv+a++qLGGse+AtPk++l+l++ +gLt++hvkSHLQkYR+
  XP_013587729.1 154 KQRMRWTPELHEAFVDAINQLGGSERATPKAVLKLINSPGLTIYHVKSHLQKYRT 208
                     79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.862151211IPR017930Myb domain
SuperFamilySSF466896.63E-17152208IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.1E-30153210IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-23154208IPR006447Myb domain, plants
PfamPF002494.4E-10156207IPR001005SANT/Myb domain
PfamPF143791.9E-22242288IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MNNPVPCQVF PLASGGTSSG YCNGTYVSSH ERSSSQTRQS VETQPLPVTN QPQGQRDMSW  60
PEDQLQGFFD FPPQAESSRA KSEWPDWANQ MISVDDGLEP NWSELLGDPN VLNQDSKIPT  120
PSCDIARQEI VVSTQHQVDP SSAKSPQASS MTSKQRMRWT PELHEAFVDA INQLGGSERA  180
TPKAVLKLIN SPGLTIYHVK SHLQKYRTAR YKPEISVDTE KPPLKTLKTI EDIKSLDLKT  240
SIEITEALRL QMEVQKKLHE QLEVQRTLQL QIEEQGRYLQ MMIEKQQQKM QEKKIGSSSG  300
TSTMPEADTS SAPSPDLSQV SITERLQSGS GTLDQSGSPS LATKKRVRED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-28154212260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-28154212260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-28154212260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-28154212260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-28154212260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-28154212260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-28154212260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-28154212260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013587729.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013587725.10.0PREDICTED: protein PHR1-LIKE 1 isoform X3
RefseqXP_013587727.10.0PREDICTED: protein PHR1-LIKE 1 isoform X3
RefseqXP_013587728.10.0PREDICTED: protein PHR1-LIKE 1 isoform X3
RefseqXP_013587729.10.0PREDICTED: protein PHR1-LIKE 1 isoform X3
RefseqXP_013587730.10.0PREDICTED: protein PHR1-LIKE 1 isoform X3
SwissprotF4J3P71e-172PHLD_ARATH; Myb family transcription factor PHL13
TrEMBLA0A0D3CMT90.0A0A0D3CMT9_BRAOL; Uncharacterized protein
STRINGBo5g148190.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04450.21e-164G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]