PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013587723.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 424aa MW: 47625.9 Da PI: 6.0633

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013587723.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.4	1.3e-32	228	282	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fv+a++qLGGse+AtPk++l+l++ +gLt++hvkSHLQkYR+ XP_013587723.1 228 KQRMRWTPELHEAFVDAINQLGGSERATPKAVLKLINSPGLTIYHVKSHLQKYRT 282 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.862	225	285	IPR017930	Myb domain
SuperFamily	SSF46689	8.96E-17	226	282	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.5E-30	227	284	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.7E-23	228	282	IPR006447	Myb domain, plants
Pfam	PF00249	5.8E-10	230	281	IPR001005	SANT/Myb domain
Pfam	PF14379	2.5E-22	316	362	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MIKCVHSDSN PLIVSVVYQK PFCLFPFFLF PNGTFPSCLH LIPISYFVVH YFDFDASVMS 60 MIASWLKQVL FWEPMNNPVP CQVFPLASGG TSSGYCNGTY VSSHERSSSQ TRQSVETQPL 120 PVTNQPQGQR DMSWPEDQLQ GFFDFPPQAE SSRAKSEWPD WANQMISVDD GLEPNWSELL 180 GDPNVLNQDS KIPTPSCDIA RQEIVVSTQH QVDPSSAKSP QASSMTSKQR MRWTPELHEA 240 FVDAINQLGG SERATPKAVL KLINSPGLTI YHVKSHLQKY RTARYKPEIS VDTEKPPLKT 300 LKTIEDIKSL DLKTSIEITE ALRLQMEVQK KLHEQLEVQR TLQLQIEEQG RYLQMMIEKQ 360 QQKMQEKKIG SSSGTSTMPE ADTSSAPSPD LSQVSITERL QSGSGTLDQS GSPSLATKKR 420 VRED

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MIKCVHSDSN PLIVSVVYQK PFCLFPFFLF PNGTFPSCLH LIPISYFVVH YFDFDASVMS  60
MIASWLKQVL FWEPMNNPVP CQVFPLASGG TSSGYCNGTY VSSHERSSSQ TRQSVETQPL  120
PVTNQPQGQR DMSWPEDQLQ GFFDFPPQAE SSRAKSEWPD WANQMISVDD GLEPNWSELL  180
GDPNVLNQDS KIPTPSCDIA RQEIVVSTQH QVDPSSAKSP QASSMTSKQR MRWTPELHEA  240
FVDAINQLGG SERATPKAVL KLINSPGLTI YHVKSHLQKY RTARYKPEIS VDTEKPPLKT  300
LKTIEDIKSL DLKTSIEITE ALRLQMEVQK KLHEQLEVQR TLQLQIEEQG RYLQMMIEKQ  360
QQKMQEKKIG SSSGTSTMPE ADTSSAPSPD LSQVSITERL QSGSGTLDQS GSPSLATKKR  420
VRED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-28	228	286	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-28	228	286	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-28	228	286	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-28	228	286	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-28	228	286	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-28	228	286	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-28	228	286	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-28	228	286	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013587723.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013587723.1	0.0	PREDICTED: protein PHR1-LIKE 1 isoform X1
Swissprot	F4J3P7	1e-169	PHLD_ARATH; Myb family transcription factor PHL13
TrEMBL	A0A0D3CMT9	0.0	A0A0D3CMT9_BRAOL; Uncharacterized protein
STRING	Bo5g148190.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM856	27	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04450.2	1e-162	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]