PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013587707.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 372aa    MW: 42274.8 Da    PI: 8.7709
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013587707.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1023.7e-32211264255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  XP_013587707.1 211 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 264
                     9****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-15208264IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-28209264IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-23211264IPR006447Myb domain, plants
PfamPF002492.4E-7212263IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNSQ PSSTWQRRRP TTDQEDHEEL DLGFWRRALD SRTSSLVSNS  60
SSKTTNNHHH HPLEDRSLSN NSHRHQQQHP HLLPNCNGSN IFTSFQFPTQ QQQHLQGFLA  120
HDLNTHLRPI RGIPLYQNPP PHHHHRPPPC FPFDPSSLIP SSSPTPTGIN NNSFGTSRVN  180
PNHHNHQHHH QTLNRARFMP RFPAKRSMRA PRMRWTTTLH ARFVHAVELL GGHERATPKS  240
VLELMDVKDL TLAHVKSHLQ MYRTVKTTDK AAASSGDNNS DDWMFDMNRK SRDSDELTNP  300
LEKSNGRWTN SSGEARLHGK LIDNVAEIIL PSENEIDGKS SSYERISSEE MSSSNISGTS  360
PFKPNLEFTL GS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-16212266458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-16212266458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-16212266357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-16212266357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-16212266357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-16212266357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-16212266458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-16212266458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-16212266458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-16212266458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-16212266458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-16212266458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing phloem. {ECO:0000269|PubMed:14561401}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013587707.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934910.0AB493491.1 Arabidopsis thaliana At1g32240 mRNA for hypothetical protein, partial cds, clone: RAAt1g32240.
GenBankAY0486890.0AY048689.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI2 (KAN2) mRNA, complete cds.
GenBankBT0292110.0BT029211.1 Arabidopsis thaliana At1g32240 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013587707.10.0PREDICTED: probable transcription factor KAN2 isoform X2
SwissprotQ9C6160.0KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A0D3CDP10.0A0A0D3CDP1_BRAOL; Uncharacterized protein
STRINGBo5g048880.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.11e-146G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]