PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013587618.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 453aa    MW: 49762.6 Da    PI: 4.8671
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013587618.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.25.4e-17271318355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++hn+ ErrRR++iN+++  L+el+P +      K +Ka++Le A+eY+ksLq
  XP_013587618.1 271 EMHNISERRRREKINEKLKALQELIPRC-----NKTDKASMLEDAIEYVKSLQ 318
                     58*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-20266328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.52268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.27E-18271322No hitNo description
PfamPF000101.8E-14271318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-22272327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17274323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MGEDDIVELL WKSGQVVESS QTQRPPVPPP ILRGSGSGGG GGEESAPLPP PPPLHNHQQQ  60
PSDDQNLFIG EDEMASWLLH HPLREEDQFH SHLFYSGVVS AVPSTQPQAS ASLTPPQPPA  120
ASTVYTPTAA ERPMGQVMAE GRAESFFNFW RLRGNIHTGG RVETAAAQWV KDSTQVGSSA  180
TPSSSAATAT SGVLQAFAVQ SLGQRVDTVC EIAGPSSSVV SKTETELFLI ETEADDDERK  240
REEREEPSDD AEETGEEARG STSRKRSRAA EMHNISERRR REKINEKLKA LQELIPRCNK  300
TDKASMLEDA IEYVKSLQMQ IQMMSMRGGG MMPMMYTPNM QRFMPSSAMG MMGMNRPPFI  360
PFPGMALPRP AHMEGLGPPY PPPRYPFPNV QAFDPNQPQF PGYMNPYSQF VGLQQMQQPP  420
PPTQLQNQSS SQLSFSQASS SKEPEDQDNK PNG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263280RKRSRAAEMHNISERRRR
2276281ERRRRE
3277282RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013587618.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013587618.10.0PREDICTED: transcription factor bHLH119-like
SwissprotQ9SVU71e-129BH056_ARATH; Putative transcription factor bHLH056
TrEMBLA0A0D3A3N80.0A0A0D3A3N8_BRAOL; Uncharacterized protein
STRINGBo1g017100.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM90411635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28811.11e-82bHLH family protein