PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013587482.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 505aa MW: 55850.7 Da PI: 8.0235 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 102 | 124 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_013587482.1 102 FVCEICNKGFQRDQNLQLHRRGH 124 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.9E-6 | 101 | 124 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 101 | 124 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 8.1E-5 | 102 | 124 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.017 | 102 | 124 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 102 | 124 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 104 | 124 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 240 | 144 | 174 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 3.9E-6 | 174 | 199 | No hit | No description |
SMART | SM00355 | 180 | 179 | 199 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 505 aa Download sequence Send to blast |
MTSKDMLLHQ QVQQQQEENM SNLTSSGDQA SVSSGNRTEA SGSNFFHHQQ QQEEQQQFSV 60 PESQPQKKRR NQPGNPGPYE KNDPESEVIA LSPKTLMATN RFVCEICNKG FQRDQNLQLH 120 RRGHNLPWKL KQRSNKEAIR KKVYVCPEAS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK 180 CDKCSKKYAV QSDCKAHSKT CGTKEYRCDC GTLFSRRDSY ITHRAFCVAL AEETAREVVL 240 PQNQNHQSNP LIIHQSSSHH QAQANMNISS SSSSSHNIIN TLHFETNVNN CESSSNHLHT 300 FPMKKEQQQT DDQIINYHHH GVPTWLSPQP QDLTSSNPSP SNGGGGGGLF SLAASPAMSA 360 TALLQKAAQM GSTRTTPLPP TTDFERSHNT LTTTMAAMTS PSGFITSNNN NQAFIQDYNA 420 SGFNHHHGGE EAFDNTFSGF LRTNADTTTA GSDTNKSGGG GEGLTRDFLG IRPLMSHNEI 480 LSFVGLGNCI NDAASDQLHP KPWQG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-31 | 175 | 243 | 3 | 71 | Zinc finger protein JACKDAW |
5b3h_F | 2e-31 | 175 | 243 | 3 | 71 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 141 | KLKQRSNKEAIRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013587482.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF361797 | 0.0 | AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds. | |||
GenBank | AY091693 | 0.0 | AY091693.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013587477.1 | 0.0 | PREDICTED: protein indeterminate-domain 11-like isoform X1 | ||||
Refseq | XP_013587478.1 | 0.0 | PREDICTED: protein indeterminate-domain 11-like isoform X1 | ||||
Refseq | XP_013587479.1 | 0.0 | PREDICTED: protein indeterminate-domain 11-like isoform X1 | ||||
Swissprot | Q9LRW7 | 0.0 | IDD11_ARATH; Protein indeterminate-domain 11 | ||||
TrEMBL | A0A3P6FLN5 | 0.0 | A0A3P6FLN5_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g132030.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13810.1 | 0.0 | indeterminate(ID)-domain 11 |
Publications ? help Back to Top | |||
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