PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013587480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 507aa MW: 56032.9 Da PI: 8.2478 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 96 | 118 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_013587480.1 96 FVCEICNKGFQRDQNLQLHRRGH 118 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.19E-6 | 95 | 118 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 95 | 118 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.017 | 96 | 118 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 8.1E-5 | 96 | 118 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.949 | 96 | 118 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 98 | 118 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 240 | 138 | 168 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 5.19E-6 | 168 | 193 | No hit | No description |
SMART | SM00355 | 180 | 173 | 193 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence Send to blast |
MTSKDMLLHQ QVQQQQEENM SNLTSSGDQA SVSSGNRTEA SGSNFFHHQQ QQEEQQQFSV 60 PESQPQKKRR NQPGNPDPES EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL 120 PWKLKQRSNK EAIRKKVYVC PEASCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK 180 KYAVQSDCKA HSKTCGTKEY RCDCGTLFSR RDSYITHRAF CVALAEETAR EVVLPQNQNH 240 QSNPLIIHQS SSHHQAQANM NISSSSSSSH NIINTLHFET NVNNCESSSN HLHTFPMKKE 300 QQQTDDQIIN YHHHGVPTWL SPQPQDLTSS NPSPSNGGGG GGLFSLAASP AMSATALLQK 360 AAQMGSTRTT PLPPTTDFER SHNTLTTTMA AMTSPSGFIT SNNNNQAFIQ DYNASGFNHH 420 HGGEEAFDNT FSGFLRTNAD TTTAGSDTNK SGGGGEGLTR DFLGIRPLMS HNEILSFVGL 480 GNCINDAASD QLHPKPWQGT QVGSNKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-31 | 169 | 237 | 3 | 71 | Zinc finger protein JACKDAW |
5b3h_F | 2e-31 | 169 | 237 | 3 | 71 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 135 | KLKQRSNKEAIRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013587480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF361797 | 0.0 | AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds. | |||
GenBank | AY091693 | 0.0 | AY091693.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013587480.1 | 0.0 | PREDICTED: protein indeterminate-domain 11-like isoform X2 | ||||
Swissprot | Q9LRW7 | 0.0 | IDD11_ARATH; Protein indeterminate-domain 11 | ||||
TrEMBL | A0A0D3CKG5 | 0.0 | A0A0D3CKG5_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g132030.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13810.1 | 0.0 | indeterminate(ID)-domain 11 |
Publications ? help Back to Top | |||
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