PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013587477.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 513aa MW: 56721.6 Da PI: 8.2461

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013587477.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	102	124	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_013587477.1 102 FVCEICNKGFQRDQNLQLHRRGH 124 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.7E-5	101	124	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.81E-6	101	124	No hit	No description
Pfam	PF12171	8.2E-5	102	124	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	102	124	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	102	124	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	104	124	IPR007087	Zinc finger, C2H2
SMART	SM00355	240	144	174	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	3.81E-6	174	199	No hit	No description
SMART	SM00355	180	179	199	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence Send to blast
MTSKDMLLHQ QVQQQQEENM SNLTSSGDQA SVSSGNRTEA SGSNFFHHQQ QQEEQQQFSV 60 PESQPQKKRR NQPGNPGPYE KNDPESEVIA LSPKTLMATN RFVCEICNKG FQRDQNLQLH 120 RRGHNLPWKL KQRSNKEAIR KKVYVCPEAS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK 180 CDKCSKKYAV QSDCKAHSKT CGTKEYRCDC GTLFSRRDSY ITHRAFCVAL AEETAREVVL 240 PQNQNHQSNP LIIHQSSSHH QAQANMNISS SSSSSHNIIN TLHFETNVNN CESSSNHLHT 300 FPMKKEQQQT DDQIINYHHH GVPTWLSPQP QDLTSSNPSP SNGGGGGGLF SLAASPAMSA 360 TALLQKAAQM GSTRTTPLPP TTDFERSHNT LTTTMAAMTS PSGFITSNNN NQAFIQDYNA 420 SGFNHHHGGE EAFDNTFSGF LRTNADTTTA GSDTNKSGGG GEGLTRDFLG IRPLMSHNEI 480 LSFVGLGNCI NDAASDQLHP KPWQGTQVGS NKR

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence Send to blast

MTSKDMLLHQ QVQQQQEENM SNLTSSGDQA SVSSGNRTEA SGSNFFHHQQ QQEEQQQFSV  60
PESQPQKKRR NQPGNPGPYE KNDPESEVIA LSPKTLMATN RFVCEICNKG FQRDQNLQLH  120
RRGHNLPWKL KQRSNKEAIR KKVYVCPEAS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK  180
CDKCSKKYAV QSDCKAHSKT CGTKEYRCDC GTLFSRRDSY ITHRAFCVAL AEETAREVVL  240
PQNQNHQSNP LIIHQSSSHH QAQANMNISS SSSSSHNIIN TLHFETNVNN CESSSNHLHT  300
FPMKKEQQQT DDQIINYHHH GVPTWLSPQP QDLTSSNPSP SNGGGGGGLF SLAASPAMSA  360
TALLQKAAQM GSTRTTPLPP TTDFERSHNT LTTTMAAMTS PSGFITSNNN NQAFIQDYNA  420
SGFNHHHGGE EAFDNTFSGF LRTNADTTTA GSDTNKSGGG GEGLTRDFLG IRPLMSHNEI  480
LSFVGLGNCI NDAASDQLHP KPWQGTQVGS NKR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-31	175	243	3	71	Zinc finger protein JACKDAW
5b3h_F	2e-31	175	243	3	71	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	128	141	KLKQRSNKEAIRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013587477.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF361797	0.0	AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
GenBank	AY091693	0.0	AY091693.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013587477.1	0.0	PREDICTED: protein indeterminate-domain 11-like isoform X1
Refseq	XP_013587478.1	0.0	PREDICTED: protein indeterminate-domain 11-like isoform X1
Refseq	XP_013587479.1	0.0	PREDICTED: protein indeterminate-domain 11-like isoform X1
Swissprot	Q9LRW7	0.0	IDD11_ARATH; Protein indeterminate-domain 11
TrEMBL	A0A3P6FLN5	0.0	A0A3P6FLN5_BRAOL; Uncharacterized protein
STRING	Bo5g132030.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13810.1	0.0	indeterminate(ID)-domain 11

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]