PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013587449.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 517aa MW: 58661 Da PI: 6.2113 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31.1 | 4.1e-10 | 365 | 402 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+++e+ LAk++gL+++qV +WF N R + XP_013587449.1 365 FEHflHPYPKEAEKMMLAKQTGLSKNQVANWFINARVR 402 664459******************************88 PP | |||||||
2 | BELL | 112.1 | 3.1e-36 | 221 | 292 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqel++kk+kLl++++eVdkrY+qy++q+++++ssFe+vag gsakpYts+Al++iS +Fr+L+dai+eqi XP_013587449.1 221 ERQELRNKKNKLLTMVDEVDKRYNQYYHQMEALASSFEIVAGFGSAKPYTSVALNKISCSFRSLRDAIKEQI 292 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.8E-45 | 156 | 290 | IPR006563 | POX domain |
Pfam | PF07526 | 5.3E-44 | 162 | 288 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.552 | 343 | 406 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-9 | 346 | 410 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.37E-11 | 346 | 407 | No hit | No description |
SuperFamily | SSF46689 | 3.04E-17 | 347 | 411 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-27 | 349 | 410 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.3E-18 | 363 | 402 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 517 aa Download sequence Send to blast |
MAVYYSSNAN CYQQEPIYLN HQQQQQQQAS SSSAAASFVG ENVRNEMAFI PPTTGLQTLN 60 GDATGNGAVS SSDLSFYDGQ GLSLSLGNQI SLPSFHHQQY HHLGFTPNPS ISAKETPPFD 120 VEEKSKEMML SLVGQSDPSS GYAGLYNNYR FNETSGGFMS GVLRSRYLKP AQNLLDEVVS 180 VKKELNQMRK KKKKGEDFNN GSKDTQGELS TDSNVKLSTI ERQELRNKKN KLLTMVDEVD 240 KRYNQYYHQM EALASSFEIV AGFGSAKPYT SVALNKISCS FRSLRDAIKE QIQIIREKLG 300 EKGGGELSLD EHQGGGERIP RLRYLDQRLR QQRAFHQQLG MVRPSWRPQR GLPENSVSVL 360 RAWLFEHFLH PYPKEAEKMM LAKQTGLSKN QVANWFINAR VRLWKPMIED IYKEEFGDES 420 ELQISKSSQE PNSTNQEDSS SQQQQEDNKN NLAYPSADTT NIDDEPQQQQ MNRSGDYETL 480 MNNYQGFGLE EEYRYVGGSN QEDSRFSNAH HLHDFVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 9e-16 | 352 | 409 | 5 | 62 | Homeobox protein Meis2 |
3k2a_B | 9e-16 | 352 | 409 | 5 | 62 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013587449.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189558 | 0.0 | AC189558.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006P24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013587448.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 10 | ||||
Refseq | XP_013587449.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 10 | ||||
Swissprot | Q9FXG8 | 0.0 | BLH10_ARATH; BEL1-like homeodomain protein 10 | ||||
TrEMBL | A0A0D3CBK8 | 0.0 | A0A0D3CBK8_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g027690.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19700.3 | 0.0 | BEL1-like homeodomain 10 |
Publications ? help Back to Top | |||
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