PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013587448.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TALE

Protein Properties

Length: 517aa MW: 58661 Da PI: 6.2113

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013587448.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	31.1	4.1e-10	365	402	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+++e+ LAk++gL+++qV +WF N R + XP_013587448.1 365 FEHflHPYPKEAEKMMLAKQTGLSKNQVANWFINARVR 402 664459******************************88 PP
2	BELL	112.1	3.1e-36	221	292	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqel++kk+kLl++++eVdkrY+qy++q+++++ssFe+vag gsakpYts+Al++iS +Fr+L+dai+eqi XP_013587448.1 221 ERQELRNKKNKLLTMVDEVDKRYNQYYHQMEALASSFEIVAGFGSAKPYTSVALNKISCSFRSLRDAIKEQI 292 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.8E-45	156	290	IPR006563	POX domain
Pfam	PF07526	5.3E-44	162	288	IPR006563	POX domain
PROSITE profile	PS50071	12.552	343	406	IPR001356	Homeobox domain
SMART	SM00389	1.1E-9	346	410	IPR001356	Homeobox domain
CDD	cd00086	1.37E-11	346	407	No hit	No description
SuperFamily	SSF46689	3.04E-17	347	411	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-27	349	410	IPR009057	Homeodomain-like
Pfam	PF05920	4.3E-18	363	402	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence Send to blast
MAVYYSSNAN CYQQEPIYLN HQQQQQQQAS SSSAAASFVG ENVRNEMAFI PPTTGLQTLN 60 GDATGNGAVS SSDLSFYDGQ GLSLSLGNQI SLPSFHHQQY HHLGFTPNPS ISAKETPPFD 120 VEEKSKEMML SLVGQSDPSS GYAGLYNNYR FNETSGGFMS GVLRSRYLKP AQNLLDEVVS 180 VKKELNQMRK KKKKGEDFNN GSKDTQGELS TDSNVKLSTI ERQELRNKKN KLLTMVDEVD 240 KRYNQYYHQM EALASSFEIV AGFGSAKPYT SVALNKISCS FRSLRDAIKE QIQIIREKLG 300 EKGGGELSLD EHQGGGERIP RLRYLDQRLR QQRAFHQQLG MVRPSWRPQR GLPENSVSVL 360 RAWLFEHFLH PYPKEAEKMM LAKQTGLSKN QVANWFINAR VRLWKPMIED IYKEEFGDES 420 ELQISKSSQE PNSTNQEDSS SQQQQEDNKN NLAYPSADTT NIDDEPQQQQ MNRSGDYETL 480 MNNYQGFGLE EEYRYVGGSN QEDSRFSNAH HLHDFVV

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence Send to blast

MAVYYSSNAN CYQQEPIYLN HQQQQQQQAS SSSAAASFVG ENVRNEMAFI PPTTGLQTLN  60
GDATGNGAVS SSDLSFYDGQ GLSLSLGNQI SLPSFHHQQY HHLGFTPNPS ISAKETPPFD  120
VEEKSKEMML SLVGQSDPSS GYAGLYNNYR FNETSGGFMS GVLRSRYLKP AQNLLDEVVS  180
VKKELNQMRK KKKKGEDFNN GSKDTQGELS TDSNVKLSTI ERQELRNKKN KLLTMVDEVD  240
KRYNQYYHQM EALASSFEIV AGFGSAKPYT SVALNKISCS FRSLRDAIKE QIQIIREKLG  300
EKGGGELSLD EHQGGGERIP RLRYLDQRLR QQRAFHQQLG MVRPSWRPQR GLPENSVSVL  360
RAWLFEHFLH PYPKEAEKMM LAKQTGLSKN QVANWFINAR VRLWKPMIED IYKEEFGDES  420
ELQISKSSQE PNSTNQEDSS SQQQQEDNKN NLAYPSADTT NIDDEPQQQQ MNRSGDYETL  480
MNNYQGFGLE EEYRYVGGSN QEDSRFSNAH HLHDFVV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	9e-16	352	409	5	62	Homeobox protein Meis2
3k2a_B	9e-16	352	409	5	62	Homeobox protein Meis2
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013587448.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189558	0.0	AC189558.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006P24, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013587448.1	0.0	PREDICTED: BEL1-like homeodomain protein 10
Refseq	XP_013587449.1	0.0	PREDICTED: BEL1-like homeodomain protein 10
Swissprot	Q9FXG8	0.0	BLH10_ARATH; BEL1-like homeodomain protein 10
TrEMBL	A0A0D3CBK8	0.0	A0A0D3CBK8_BRAOL; Uncharacterized protein
STRING	Bo5g027690.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3820	19	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19700.3	0.0	BEL1-like homeodomain 10

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]