PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013587407.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 262aa MW: 29387 Da PI: 7.232

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013587407.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97	1.3e-30	77	130	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl XP_013587407.1 77 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 130 59*****************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.059	74	133	IPR017930	Myb domain
SuperFamily	SSF46689	2.24E-20	74	134	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.1E-31	76	135	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-24	78	130	IPR006447	Myb domain, plants
Pfam	PF00249	9.2E-8	80	129	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MREEDSNWFA KWEEELPSPE ELIPLSQSLV TPDLALAFDL RSPNQPQPQT TPPQQTNSSA 60 EFAVDSSGDE PARTLKRPRL VWTPQLHKRF VDAVAHLGIK NAVPKTIMQL MSVDGLTREN 120 VASHLQKYRL YLKRMQSGGG NVVGESDHLF ASSPVPTHFL HPTARQSSDH FVPSFVPIAS 180 LQHHQLQFLH RQLSAVNFAS QTNNNGKAMD QSLFLARQSQ HQQQQVLTRQ ASLHLHSQVA 240 NYADALEQGA NTVLTLFPPR EN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	5e-33	77	133	1	57	Transcription factor LUX
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bol.8949	0.0	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaves, stems, petioles, filaments, stigma, pedicels, sepals, anthers, petals, and siliques. {ECO:0000269\|PubMed:20331973}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269\|PubMed:20331973}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00056	PBM	Transfer from AT5G05090	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013587407.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269\|PubMed:20331973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013587407.1	0.0	PREDICTED: transcription factor PCL1-like
Swissprot	O22210	1e-58	MYBC1_ARATH; Transcription factor MYBC1
TrEMBL	A0A0D3CA85	0.0	A0A0D3CA85_BRAOL; Uncharacterized protein
STRING	Bo5g019990.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1549	27	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05090.1	1e-100	G2-like family protein

Publications ? help Back to Top
Sardesai N,Laluk K,Mengiste T,Gelvin S The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium. Plant Signal Behav, 2018. [PMID:24785741]