PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013587332.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HB-PHD | ||||||||
Protein Properties | Length: 687aa MW: 76173.8 Da PI: 4.5765 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 43.9 | 3.9e-14 | 584 | 629 | 8 | 53 |
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 t+ +++L e F++nryp+ ++re LAk+l++t +qV +WF N R XP_013587332.1 584 TNPKTQRLFESFHENRYPDISTRENLAKELQMTVKQVNNWFRNTRF 629 6678999************************************995 PP | |||||||
2 | PHD | 39.3 | 1.5e-13 | 250 | 304 | 1 | 50 |
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 +C+ Cg+ + ++++vlCdg C++ fH++C++++l++e++p + +wlC+ C + XP_013587332.1 250 FCSKCGSkdVHIDNDIVLCDGfCDRGFHQYCVEPPLRKEDIPPDdeSWLCPGCAC 304 69****965555********88*******************99999*******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 7.75E-14 | 240 | 305 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 5.9E-13 | 246 | 304 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 11.03 | 248 | 305 | IPR019787 | Zinc finger, PHD-finger |
Pfam | PF00628 | 5.4E-11 | 250 | 304 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 3.1E-9 | 250 | 303 | IPR001965 | Zinc finger, PHD-type |
CDD | cd15504 | 2.21E-26 | 250 | 302 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 251 | 302 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE profile | PS50071 | 12.973 | 574 | 634 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-9 | 575 | 638 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-13 | 584 | 638 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.1E-11 | 584 | 629 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.24E-13 | 584 | 631 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.54E-12 | 588 | 628 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 687 aa Download sequence Send to blast |
MDRAIRRRTT SSGSGLDQTN GAEVTPTPNK VPEAESHMKH ESTNDVNGNV KIANGVSGEE 60 EQESRTPVTV KKSSGTKFTG SHRELVLGLP CRGQFEIKRS SKKLGGGGGG GKKNVLASSH 120 KRAQGSKEAA SVRSNPTPVN ESKKRKNYIN KVEVREDDEY TRIKKKLRYF LNRISYEQSL 180 IDAYSLEGWK GSSAEKLRPE KELDRAKKEI LRRKVKIRDL IQHLDTLCAE GNIPESLFNS 240 HGEISSEDIF CSKCGSKDVH IDNDIVLCDG FCDRGFHQYC VEPPLRKEDI PPDDESWLCP 300 GCACKDYSFE LLNDSLGTKL SVSDSWEKVF PEAAAAMAGG GGSNLDCDLP SDDSEDEEYD 360 PEGLNDNEGD EDGSDESENE DGSSDESASA SEEMIGSFKD AKDIMNLPSD DSEDDDYDPD 420 APARDEDKMQ ESSNSDDSDS DDVEANSKGD ESDQQDEVTP HGKLGRKKSK LPDVSISESD 480 AGIGEDVPGR RKVERLDYKK LYDEEYENVP TSSSDDEDWD KIAGKEDFES ADEGDTVPLE 540 QPSIEEDQKP KRENKKVTLK APQEAPREDG CSGKQSSSAS SKQTNPKTQR LFESFHENRY 600 PDISTRENLA KELQMTVKQV NNWFRNTRFS TSKTMSSKED VEKLRTCKER DGETSVAGSS 660 KQTEPVTENK SGASESTSSG SRKRRRR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 161 | 167 | RIKKKLR |
2 | 488 | 495 | GRRKVERL |
3 | 681 | 685 | RKRRR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Primarily detected in root tissue. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds only to large DNA fragments. Recognizes a DNA fragment carrying 8 copies of box7 motif of the light-induced cab-E promoter of Nicotiana plumbaginifolia. Also recognizes the box7m1 motif. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013587332.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013587327.1 | 0.0 | PREDICTED: homeobox protein HAT3.1 | ||||
Refseq | XP_013587328.1 | 0.0 | PREDICTED: homeobox protein HAT3.1 | ||||
Refseq | XP_013587329.1 | 0.0 | PREDICTED: homeobox protein HAT3.1 | ||||
Refseq | XP_013587330.1 | 0.0 | PREDICTED: homeobox protein HAT3.1 | ||||
Refseq | XP_013587331.1 | 0.0 | PREDICTED: homeobox protein HAT3.1 | ||||
Refseq | XP_013587332.1 | 0.0 | PREDICTED: homeobox protein HAT3.1 | ||||
Refseq | XP_013587333.1 | 0.0 | PREDICTED: homeobox protein HAT3.1 | ||||
Swissprot | Q04996 | 0.0 | HAT31_ARATH; Homeobox protein HAT3.1 | ||||
TrEMBL | A0A0D3CIF6 | 0.0 | A0A0D3CIF6_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g114050.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19510.1 | 1e-154 | Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain |
Publications ? help Back to Top | |||
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