PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013587331.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HB-PHD
Protein Properties Length: 687aa    MW: 76173.8 Da    PI: 4.5765
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013587331.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox43.93.9e-14584629853
                     -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
        Homeobox   8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                     t+  +++L e F++nryp+ ++re LAk+l++t +qV +WF N R 
  XP_013587331.1 584 TNPKTQRLFESFHENRYPDISTRENLAKELQMTVKQVNNWFRNTRF 629
                     6678999************************************995 PP
2PHD39.31.5e-13250304150
                     SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
             PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 
                     +C+ Cg+   + ++++vlCdg C++ fH++C++++l++e++p +  +wlC+ C +
  XP_013587331.1 250 FCSKCGSkdVHIDNDIVLCDGfCDRGFHQYCVEPPLRKEDIPPDdeSWLCPGCAC 304
                     69****965555********88*******************99999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579037.75E-14240305IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.105.9E-13246304IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.03248305IPR019787Zinc finger, PHD-finger
PfamPF006285.4E-11250304IPR019787Zinc finger, PHD-finger
SMARTSM002493.1E-9250303IPR001965Zinc finger, PHD-type
CDDcd155042.21E-26250302No hitNo description
PROSITE patternPS013590251302IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007112.973574634IPR001356Homeobox domain
SMARTSM003891.9E-9575638IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-13584638IPR009057Homeodomain-like
PfamPF000461.1E-11584629IPR001356Homeobox domain
SuperFamilySSF466891.24E-13584631IPR009057Homeodomain-like
CDDcd000867.54E-12588628No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MDRAIRRRTT SSGSGLDQTN GAEVTPTPNK VPEAESHMKH ESTNDVNGNV KIANGVSGEE  60
EQESRTPVTV KKSSGTKFTG SHRELVLGLP CRGQFEIKRS SKKLGGGGGG GKKNVLASSH  120
KRAQGSKEAA SVRSNPTPVN ESKKRKNYIN KVEVREDDEY TRIKKKLRYF LNRISYEQSL  180
IDAYSLEGWK GSSAEKLRPE KELDRAKKEI LRRKVKIRDL IQHLDTLCAE GNIPESLFNS  240
HGEISSEDIF CSKCGSKDVH IDNDIVLCDG FCDRGFHQYC VEPPLRKEDI PPDDESWLCP  300
GCACKDYSFE LLNDSLGTKL SVSDSWEKVF PEAAAAMAGG GGSNLDCDLP SDDSEDEEYD  360
PEGLNDNEGD EDGSDESENE DGSSDESASA SEEMIGSFKD AKDIMNLPSD DSEDDDYDPD  420
APARDEDKMQ ESSNSDDSDS DDVEANSKGD ESDQQDEVTP HGKLGRKKSK LPDVSISESD  480
AGIGEDVPGR RKVERLDYKK LYDEEYENVP TSSSDDEDWD KIAGKEDFES ADEGDTVPLE  540
QPSIEEDQKP KRENKKVTLK APQEAPREDG CSGKQSSSAS SKQTNPKTQR LFESFHENRY  600
PDISTRENLA KELQMTVKQV NNWFRNTRFS TSKTMSSKED VEKLRTCKER DGETSVAGSS  660
KQTEPVTENK SGASESTSSG SRKRRRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161167RIKKKLR
2488495GRRKVERL
3681685RKRRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Primarily detected in root tissue.
Functional Description ? help Back to Top
Source Description
UniProtBinds only to large DNA fragments. Recognizes a DNA fragment carrying 8 copies of box7 motif of the light-induced cab-E promoter of Nicotiana plumbaginifolia. Also recognizes the box7m1 motif.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013587331.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013587327.10.0PREDICTED: homeobox protein HAT3.1
RefseqXP_013587328.10.0PREDICTED: homeobox protein HAT3.1
RefseqXP_013587329.10.0PREDICTED: homeobox protein HAT3.1
RefseqXP_013587330.10.0PREDICTED: homeobox protein HAT3.1
RefseqXP_013587331.10.0PREDICTED: homeobox protein HAT3.1
RefseqXP_013587332.10.0PREDICTED: homeobox protein HAT3.1
RefseqXP_013587333.10.0PREDICTED: homeobox protein HAT3.1
SwissprotQ049960.0HAT31_ARATH; Homeobox protein HAT3.1
TrEMBLA0A0D3CIF60.0A0A0D3CIF6_BRAOL; Uncharacterized protein
STRINGBo5g114050.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.11e-154Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]