PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013586676.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 413aa    MW: 45738.4 Da    PI: 8.2702
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013586676.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.28.6e-114873126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ++++ C+f++rtG C yG++C+++H+
  XP_013586676.1 48 PGERDCQFYLRTGLCGYGSTCRYNHP 73
                    5789*********************9 PP
2zf-CCCH36.67.7e-1292116327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C ++++tG CkyG++Ck++H++
  XP_013586676.1  92 QPDCEYYLKTGACKYGSTCKYHHPK 116
                     789********************96 PP
3zf-CCCH38.51.9e-12136161227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C++++rtGtC++G  CkF+H++
  XP_013586676.1 136 GEKPCPYYLRTGTCRFGVACKFHHPQ 161
                     689*********************97 PP
4zf-CCCH277.6e-09271291525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                      Crff+ tGtCkyG+ Ck+ H
  XP_013586676.1 271 QCRFFMNTGTCKYGEHCKYTH 291
                     6******************88 PP
5zf-CCCH28.82.2e-09315340126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++++C  f  +G+Ck+G++C+F H+
  XP_013586676.1 315 PGQPPCGSFKSYGFCKFGPNCNFDHS 340
                     5799*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.9E-54774IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0044775IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-84973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-55175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-45372IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-689116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.80289117IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-992116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-694117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-495115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-7133163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.939134162IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-6134161IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-10136161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-6138161IPR000571Zinc finger, CCCH-type
SMARTSM003560.015266293IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.46266294IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6268291IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-7270291IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5271291IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4314341IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.845314342IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-7316340IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-5317341IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-5319340IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MRLMSDTHHV QSSTGSVRSS QKIEDAFRKM KVNDGNGVEQ SDPYPDRPGE RDCQFYLRTG  60
LCGYGSTCRY NHPTNLPQVM YYNEELPERI GQPDCEYYLK TGACKYGSTC KYHHPKDRNG  120
AEPVLFNVLN LPMRQGEKPC PYYLRTGTCR FGVACKFHHP QPDNGHSTAA AAAYGMSTFP  180
SVGLHHAGGL TMVPTYGTLP RPQLPQSYVM VSPSQGLLPP QSWTTYMGAS NSMYGVKNQV  240
YYSGSSAPMP MGVTLNGGDL SERSEQQQQQ QCRFFMNTGT CKYGEHCKYT HLGVRVSPPP  300
PPPSFINPFV LPERPGQPPC GSFKSYGFCK FGPNCNFDHS VLPYPTGLPM PSSVASPYPS  360
HVSSNYQRIS PAPSRSGSKA MPNDKPDVKK EMPGTEKPEQ VQDLSSHHHD HDS
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013586676.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013586676.10.0PREDICTED: zinc finger CCCH domain-containing protein 3
SwissprotQ94AD90.0C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A0D3C7P30.0A0A0D3C7P3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F0170.0A0A3P6F017_BRAOL; Uncharacterized protein
STRINGBo5g005120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.20.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]