PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013586612.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 290aa MW: 33257.7 Da PI: 6.6846

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013586612.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	117.3	1.6e-36	5	137	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +Gf F+Ptdeelv +yL++k+ g++ ++e i+ev+i +++Pw+L+ +kvk+++ wyfFs+r + +g+r+nr+t+sg+Wk tg ev+++ XP_013586612.1 5 VGFGFRPTDEELVGYYLHNKILGNDWLVQELINEVNISNFDPWNLRfqSKVKSRDLVWYFFSRRGS---NGDRQNRKTSSGFWKITGDPVEVKDQ 96 7**********************999899**********85347777888**9876...799******************9 PP NAM 96 ......kgelvglkktLvfykg..rapkgektdWvmheyrl 128 + ++g k++Lvf +g ++++++k+dWvmhey+ XP_013586612.1 97 wgtwcgVKGKIGYKRVLVFRRGksSSSQSTKSDWVMHEYHY 137 9888876667******882245566799*****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	41.418	3	155	IPR003441	NAC domain
SuperFamily	SSF101941	5.49E-40	5	155	IPR003441	NAC domain
Pfam	PF02365	2.0E-23	5	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MEDVVGFGFR PTDEELVGYY LHNKILGNDW LVQELINEVN ISNFDPWNLR FQSKVKSRDL 60 VWYFFSRRGS NGDRQNRKTS SGFWKITGDP VEVKDQWGTW CGVKGKIGYK RVLVFRRGKS 120 SSSQSTKSDW VMHEYHYTLL PQDQRTHVIC RLEYKGQDMS ILSANPTEPL PTFFPNVTNS 180 AASDSVVNQS VQGNSASFNT FSDYDSANQG QWFSEDFNLH QPVVSYDDGD TQRIWDYVVE 240 KNFSQYRPKK PVTVVSVDDS SDADNTDTES TTGNASKAMR MKKNGWRGNQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-21	6	157	23	169	NAC domain-containing protein 19
3swm_B	2e-21	6	157	23	169	NAC domain-containing protein 19
3swm_C	2e-21	6	157	23	169	NAC domain-containing protein 19
3swm_D	2e-21	6	157	23	169	NAC domain-containing protein 19
3swp_A	2e-21	6	157	23	169	NAC domain-containing protein 19
3swp_B	2e-21	6	157	23	169	NAC domain-containing protein 19
3swp_C	2e-21	6	157	23	169	NAC domain-containing protein 19
3swp_D	2e-21	6	157	23	169	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269\|PubMed:17158162}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250\|UniProtKB:Q949N0}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013586612.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269\|PubMed:17158162}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013586612.1	0.0	PREDICTED: NAC domain-containing protein 1-like
Swissprot	Q0WV96	9e-97	NAC1_ARATH; NAC domain-containing protein 1
TrEMBL	A0A0D3C716	0.0	A0A0D3C716_BRAOL; Uncharacterized protein
STRING	Bo5g002850.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7658	16	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01010.1	3e-91	NAC domain containing protein 1

Publications ? help Back to Top
Davuluri RV, et al. AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors. BMC Bioinformatics, 2003. 4: p. 25 [PMID:12820902] Palaniswamy SK, et al. AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks. Plant Physiol., 2006. 140(3): p. 818-29 [PMID:16524982] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liang M, et al. Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836]