PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013586569.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 1119aa MW: 126374 Da PI: 8.0841

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013586569.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.1	2e-08	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e+++++ +++G++ Wk++a + R+++++ XP_013586569.1 46 QWSKEELERFYEGYRKFGKE-WKKVAGFVH-SRSAEMV 81 6*****************.******9.9999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.4E-10	42	92	IPR009057	Homeodomain-like
SMART	SM00717	9.4E-4	43	91	IPR001005	SANT/Myb domain
Pfam	PF00249	6.6E-7	46	81	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.8E-5	46	82	IPR009057	Homeodomain-like
CDD	cd00167	1.43E-4	47	89	No hit	No description
SMART	SM01135	7.0E-61	595	696	IPR033471	DIRP domain
Pfam	PF06584	5.4E-30	595	694	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1119 aa Download sequence Send to blast
MAPSRSTKSK YKRTPRPKDV SPHKEEESMS KTKPRKRKLS DMLGPQWSKE ELERFYEGYR 60 KFGKEWKKVA GFVHSRSAEM VEALYTMNKA YLSLPEGTAS VVGLTAMMTD HYAVLHGGSD 120 SEQEKNETLR SASKRSKLKS SDHPSAGLEG LSDRLQFRSS SGYLPSLKKR RTETMPRAVG 180 KRTPRIPVSY TPEKDTRERH MSPVKKSLNQ KGDDTDDDME HEIALALTEA SQRGGSTKNP 240 HTPNRKSKMF SPDKKSEIMR ADIDMAIAKL RATDTEDAQC EPSLESTEAE NVDNPGNRNE 300 LTNGEDRSAM KEKQYYRRRF GIKEDDSKEA CSGTDEAQSL GTLDEKFKQE GDGKFLKFTY 360 RSSRRKSKKS LFTADEDTAC DALQTLADLS LMMPETATDT ESSVQAEEKR AGKASDYKET 420 DLASMSKRGS LRKWKQKRPV CNDLCNTEPE RKSPSSSVIR KGRQKASPAK VPKDELAAIS 480 QVTEPSKNKG IGEEIKPVGR GKRSASIRNS YEKKCVKPQD RTSSSNNMVD DDESAPSTAA 540 TQKEVNLPTK VRSRRKIVTE KPLTIDDVKK SEILEKFSHC ISSFKARRWC LFEWFYSAID 600 YPWFARQEFV EYLDHVGLGH VPRLTRVEWG VIRSSLGKPR RFSQQFLKEE KEKLYLYRDS 660 VRKHYDELNT GMREGLPMDL ARPLNVSQRV ICLHPKSREI HDGSVLTVDH CRYRIQFDNP 720 ELGVEFVKDT ECMPLNPLEN MPASLAKHYV LSNHHRQNSS EEKMHERVKE SMPEGYPKLS 780 CEAGCPLSPP NYIINNSLKQ EKVEISSSDP QAQNGVDEAL AVQLFNSQPS NIGHIHAREA 840 DVQALSELTR ALDKKELVLR ELNYMNNEVV ESEKDGHNAL KDSESFKKQY AAVLFQLSEI 900 NEQVSLALLG LRQRNTYQEN VPSSSITHMS NSGEPDRQLT YVDNDASDTN GFHVSEIVDS 960 SRVKARKMVF RAIQALALLR KDENNVVNIE EAIDFVNNQL STDESEGSSV QQTQASQDQR 1020 LPSTPNPSSS TQHADDSHVN PLDQNDLQVP SELVSRCMAT LLMIQRCTER QFPPSEVAQV 1080 LDSAVASLQP CCSQNLPIYT EIQKCMGIIR NQILALVPS

Sequence ? help Back to Top

Protein Sequence Length: 1119 aa Download sequence Send to blast

MAPSRSTKSK YKRTPRPKDV SPHKEEESMS KTKPRKRKLS DMLGPQWSKE ELERFYEGYR  60
KFGKEWKKVA GFVHSRSAEM VEALYTMNKA YLSLPEGTAS VVGLTAMMTD HYAVLHGGSD  120
SEQEKNETLR SASKRSKLKS SDHPSAGLEG LSDRLQFRSS SGYLPSLKKR RTETMPRAVG  180
KRTPRIPVSY TPEKDTRERH MSPVKKSLNQ KGDDTDDDME HEIALALTEA SQRGGSTKNP  240
HTPNRKSKMF SPDKKSEIMR ADIDMAIAKL RATDTEDAQC EPSLESTEAE NVDNPGNRNE  300
LTNGEDRSAM KEKQYYRRRF GIKEDDSKEA CSGTDEAQSL GTLDEKFKQE GDGKFLKFTY  360
RSSRRKSKKS LFTADEDTAC DALQTLADLS LMMPETATDT ESSVQAEEKR AGKASDYKET  420
DLASMSKRGS LRKWKQKRPV CNDLCNTEPE RKSPSSSVIR KGRQKASPAK VPKDELAAIS  480
QVTEPSKNKG IGEEIKPVGR GKRSASIRNS YEKKCVKPQD RTSSSNNMVD DDESAPSTAA  540
TQKEVNLPTK VRSRRKIVTE KPLTIDDVKK SEILEKFSHC ISSFKARRWC LFEWFYSAID  600
YPWFARQEFV EYLDHVGLGH VPRLTRVEWG VIRSSLGKPR RFSQQFLKEE KEKLYLYRDS  660
VRKHYDELNT GMREGLPMDL ARPLNVSQRV ICLHPKSREI HDGSVLTVDH CRYRIQFDNP  720
ELGVEFVKDT ECMPLNPLEN MPASLAKHYV LSNHHRQNSS EEKMHERVKE SMPEGYPKLS  780
CEAGCPLSPP NYIINNSLKQ EKVEISSSDP QAQNGVDEAL AVQLFNSQPS NIGHIHAREA  840
DVQALSELTR ALDKKELVLR ELNYMNNEVV ESEKDGHNAL KDSESFKKQY AAVLFQLSEI  900
NEQVSLALLG LRQRNTYQEN VPSSSITHMS NSGEPDRQLT YVDNDASDTN GFHVSEIVDS  960
SRVKARKMVF RAIQALALLR KDENNVVNIE EAIDFVNNQL STDESEGSSV QQTQASQDQR  1020
LPSTPNPSSS TQHADDSHVN PLDQNDLQVP SELVSRCMAT LLMIQRCTER QFPPSEVAQV  1080
LDSAVASLQP CCSQNLPIYT EIQKCMGIIR NQILALVPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	38	PRKRKL

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269\|PubMed:15246533}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013586569.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ583497	0.0	AJ583497.1 Arabidopsis thaliana mRNA for always early 3 protein (Ataly3 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013586569.1	0.0	PREDICTED: protein ALWAYS EARLY 3
Refseq	XP_013586570.1	0.0	PREDICTED: protein ALWAYS EARLY 3
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A0D3CHJ5	0.0	A0A0D3CHJ5_BRAOL; Uncharacterized protein
STRING	Bo5g101040.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12714	24	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]