PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013586533.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 372aa    MW: 40713.8 Da    PI: 5.6587
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013586533.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.71.7e-06444539
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    +C+ ++e++   +C+++  +lC +C  + H+       H++
  XP_013586533.1  4 MCDFCGEQRSMVYCRSDAACLCLSCDRSVHSAnalskrHSR 44
                    6*****************************65677777765 PP
2zf-B_box22.72.1e-074695441
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg............Htvvp 41
                     +C++++ ++++  C + ++ lC++C  ++H++            H++++
  XP_013586533.1 46 LVCERCNAQPATVRCVEERVSLCQNCDWSGHNNnnnnssssssnnHKRQT 95
                    68*****************************8877788888888887765 PP
3CCT62.51.3e-21315358144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R++a++RYkeK+k RkF+K++rY+sRKa+A+ R RvKGrFvk+ 
  XP_013586533.1 315 RNNAVMRYKEKKKARKFDKTVRYASRKARADVRRRVKGRFVKAG 358
                     99***************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.798147IPR000315B-box-type zinc finger
CDDcd000219.11E-8447No hitNo description
SMARTSM003361.1E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501199.0154396IPR000315B-box-type zinc finger
CDDcd000211.86E-54776No hitNo description
SMARTSM003360.964896IPR000315B-box-type zinc finger
PROSITE profilePS5101715.18315357IPR010402CCT domain
PfamPF062032.5E-16315357IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC  60
VEERVSLCQN CDWSGHNNNN NNSSSSSSNN HKRQTISCYS GCPSSSELAS IWSFCLELAG  120
QSGCEQEMGM MNIDDDGQGN QNCNEDKKDV VAGSSSRPET SSALPATSSF PKDVRVCEDD  180
FYGNLGMDEV DLALENYEEL FGTAFNTSGE LFGQGGIDSL FQKHHQAAAP EGGNLVQPAE  240
SNDDSFMSSK TEPIICFTSK PAHSNISFSG VTGDCSAGDF QECGASSSMQ LSGEPPWYPQ  300
ASSQDNNASS HSVTRNNAVM RYKEKKKARK FDKTVRYASR KARADVRRRV KGRFVKAGEA  360
YDYDPLTPTR SY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.143600.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013586533.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013586533.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
RefseqXP_013586534.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE50.0COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A0D3CLZ50.0A0A0D3CLZ5_BRAOL; Uncharacterized protein
STRINGBo5g141290.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.40.0CONSTANS-like 9