PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013586462.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 420aa    MW: 45389.5 Da    PI: 5.103
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013586462.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.68e-07365387426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     ++C++f  +  C+ G++C F H+
  XP_013586462.1 365 KPCMYFNTSRGCRNGANCLFQHD 387
                     69********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.324361389IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4365388IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-4365387IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-6366393IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MRALHKSKRV SWPPDFKLCQ VRLFISEDSP SQVGSESQDH FQAKSSGAAH LSDDNLPPGF  60
GGLLSPNESI KLSDIPVIKW QCSVQILLDD EWRMVAGDES KEAEAQNQRE LRVLEAFYPG  120
ASSIPPNPWV PADVDTSDYD DQQTLVIPIL VVEDDDVAAD TASELPTQSG VDVGTVPSIT  180
NENTSTSSSL PAASEIMAAL AALSNSKEQG GSMIDKYLLI KILSNPKMVE NLVANCGSSA  240
ASVSSNATHE TNGVVATATT PACSNGQYNP QPAVSHIPPP IVYPRQVPSD QSNYGAPPPP  300
ARDASYYQSL IQQHGGERQE APPLPVQQHL GGYRYSLQPG AGGGGPNPEI VNSNRPRDSK  360
PKIMKPCMYF NTSRGCRNGA NCLFQHDATA AYQPRNVNNN RNINNNPEMQ SAKRMRFDRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013586462.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013586462.10.0PREDICTED: zinc finger CCCH domain-containing protein 6-like
SwissprotQ56XU40.0C3H6_ARATH; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A0D3CBN30.0A0A0D3CBN3_BRAOL; Uncharacterized protein
STRINGBo5g027940.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56141418
Publications ? help Back to Top
  1. Mastrangelo AM, et al.
    Low temperature promotes intron retention in two e-cor genes of durum wheat.
    Planta, 2005. 221(5): p. 705-15
    [PMID:15666155]