PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013586354.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 263aa    MW: 30074.8 Da    PI: 4.6932
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013586354.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.7e-115699654
                    HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                     + Er+RR+++N++++ Lr+++P+ +      Kl+Ka++ +  ++Y+++L
  XP_013586354.1 56 VASERKRREKLNQRLFALRSVVPNiS------KLDKASVIRDSINYLQDL 99
                    578*********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.125099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-1752119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.63E-115399No hitNo description
PfamPF000103.8E-95599IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1556118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-1356105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEDLDDEYKN YWETTMFFQN QELEFDSWPL EEAFSGSGES SSPDGAATSP VTSKNVASER  60
KRREKLNQRL FALRSVVPNI SKLDKASVIR DSINYLQDLI DQEKKLEAEI RELESRSMLL  120
DNPTRDYDCI NNFAGNQQQD LSCINAMRSK KSRQMDYNTF GSSITRVHNH SLIEVLEMTV  180
TCMGEKTVVV CITCSKKRET MLQLCKLLES LNLNILTTNF SSFSSRLSTT LFLQANEEEK  240
STVETKIQTA IAAYNDPNCF INF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-1355109963Transcription factor MYC2
5gnj_B2e-1355109963Transcription factor MYC2
5gnj_E2e-1355109963Transcription factor MYC2
5gnj_F2e-1355109963Transcription factor MYC2
5gnj_G2e-1355109963Transcription factor MYC2
5gnj_I2e-1355109963Transcription factor MYC2
5gnj_M2e-1355109963Transcription factor MYC2
5gnj_N2e-1355109963Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15863ERKRRE
25964RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013586354.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013586354.10.0PREDICTED: transcription factor bHLH27-like isoform X2
RefseqXP_013713950.10.0transcription factor bHLH27 isoform X2
SwissprotQ700E31e-132BH027_ARATH; Transcription factor bHLH27
TrEMBLA0A0D3A3990.0A0A0D3A399_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EU130.0A0A3P6EU13_BRAOL; Uncharacterized protein
STRINGBo1g014720.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.11e-121bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]