PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013586200.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 286aa    MW: 31966.8 Da    PI: 8.951
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013586200.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.21.5e-20212246135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C ttkTp+WR+gp+g+ktLCnaCG+++r+ +l
  XP_013586200.1 212 CTHCETTKTPQWREGPNGPKTLCNACGVRFRSGRL 246
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.05E-15205268No hitNo description
SMARTSM004013.8E-20206256IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-15210243IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.084210242IPR000679Zinc finger, GATA-type
CDDcd002022.63E-17211260No hitNo description
PROSITE patternPS003440212237IPR000679Zinc finger, GATA-type
PfamPF003202.4E-18212246IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MNWLPEEEFK GLSDNFFDDF INHIDFPLED IDTTNGEGGD WDAKFKELEP PPMDMFTTFP  60
SELNSCGVAS KAGIKKNVSV LSDASAALSG INDTLNQSSS HPDVKVSKLF QSSSPVSVLE  120
SSDGSFSPPN STSLRLTFPV KGLRSKRKRP TTLRRRHLYP FEPEKLTPGE SKSETYYSYE  180
KHAKKKRKIF TTNHTVSSSS EAIDSDGVVR RCTHCETTKT PQWREGPNGP KTLCNACGVR  240
FRSGRLVPEY RPASSPTFIP SVHSNSHRKI IEMRSREGDQ FGKRAV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013586200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013586200.10.0PREDICTED: GATA transcription factor 11-like isoform X2
SwissprotQ6DBP81e-134GAT11_ARATH; GATA transcription factor 11
TrEMBLA0A0D3C8E90.0A0A0D3C8E9_BRAOL; Uncharacterized protein
STRINGBo5g008670.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.21e-115GATA transcription factor 11