PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013586044.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 539aa    MW: 58844 Da    PI: 7.6333
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013586044.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.11.7e-09187210326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     ++ C ++++t tCk+G+ CkF H+
  XP_013586044.1 187 EKDCTHYMQTRTCKFGEGCKFDHP 210
                     678********************9 PP
2zf-CCCH33.28.5e-11236262127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C+++ +t  CkyG rCkF+H++
  XP_013586044.1 236 PGEPDCPYYIKTQRCKYGLRCKFNHPK 262
                     5789*********************96 PP
3zf-CCCH38.52e-12281305327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C f+++tG Ck+G +CkF+H++
  XP_013586044.1 281 EPPCTFYMKTGKCKFGLTCKFHHPK 305
                     79*********************96 PP
4zf-CCCH38.22.4e-12353377327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C+f+++tG CkyG++C+++H++
  XP_013586044.1 353 EVDCPFYLKTGSCKYGATCRYNHPE 377
                     679********************96 PP
5zf-CCCH41.12.9e-13435460126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++++C+++++tG+Ck+G+rC+F+H+
  XP_013586044.1 435 PGQPECDYYMKTGECKFGERCRFHHP 460
                     5789*********************8 PP
6zf-CCCH41.12.9e-13492514527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C+++++tGtCkyG++CkF H+p
  XP_013586044.1 492 NCPYYMKTGTCKYGATCKFDHPP 514
                     7********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.258184212IPR000571Zinc finger, CCCH-type
SMARTSM003560.23186211IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5186211IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-7187210IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-4235262IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.826235263IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-7237262IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-5240262IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-4241260IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601278306IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-6278305IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-10281305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-5282306IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-5283304IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6350377IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3350378IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-10353377IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5354378IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4356377IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.788434462IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-7434461IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10436460IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-6436465IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5440462IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-7487514IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.375487515IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-11491514IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-6491514IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5493512IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MAAHRHQLFT YALQPSLAAA STVSPAPPPP QPLPQPQQSL SLSSLYASSA ADRYYPDATF  60
RFLSRDGSEA LTNYQATVAS SSSSSAMYHH HHLPNAAAAS HLAYPPQLIH QEAWPPGVEP  120
PAAAAAAVEP LPPGVKRTSE ALYYPTLYGA HNPMGQTEAW YTTDYLTKRL KLESTSHLPV  180
YPQRAGEKDC THYMQTRTCK FGEGCKFDHP VWVPEGGIPD WKEAPVVPND EYPERPGEPD  240
CPYYIKTQRC KYGLRCKFNH PKTAAAVTVE TPDALPERPS EPPCTFYMKT GKCKFGLTCK  300
FHHPKDIQLP SSSQDNGSTE AVTSEPDVTN NPHVTFAPAA YYNSKGLPAR PAEVDCPFYL  360
KTGSCKYGAT CRYNHPERTA FTPQAAGINY PLVSPTSASV NLGLINSAAS LYQTLAQPTN  420
LLQLGALTAT YPQRPGQPEC DYYMKTGECK FGERCRFHHP ADRLNATSKQ APQQPNVKLS  480
LAGYPRREGA QNCPYYMKTG TCKYGATCKF DHPPPGEVMA KTASEAEADA AGGATDTTQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013586044.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013586044.10.0PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X6
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A3N6TDT90.0A0A3N6TDT9_BRACR; Uncharacterized protein
STRINGBo5g133310.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)