PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013586043.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 542aa MW: 59198.5 Da PI: 7.6333 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.1 | 1.7e-09 | 187 | 210 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C ++++t tCk+G+ CkF H+ XP_013586043.1 187 EKDCTHYMQTRTCKFGEGCKFDHP 210 678********************9 PP | |||||||
2 | zf-CCCH | 33.2 | 8.6e-11 | 236 | 262 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ +t CkyG rCkF+H++ XP_013586043.1 236 PGEPDCPYYIKTQRCKYGLRCKFNHPK 262 5789*********************96 PP | |||||||
3 | zf-CCCH | 38.4 | 2e-12 | 281 | 305 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG Ck+G +CkF+H++ XP_013586043.1 281 EPPCTFYMKTGKCKFGLTCKFHHPK 305 79*********************96 PP | |||||||
4 | zf-CCCH | 38 | 2.8e-12 | 356 | 380 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+f+++tG CkyG++C+++H++ XP_013586043.1 356 EVDCPFYLKTGSCKYGATCRYNHPE 380 578********************96 PP | |||||||
5 | zf-CCCH | 41.1 | 2.9e-13 | 438 | 463 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C+++++tG+Ck+G+rC+F+H+ XP_013586043.1 438 PGQPECDYYMKTGECKFGERCRFHHP 463 5789*********************8 PP | |||||||
6 | zf-CCCH | 41.1 | 2.9e-13 | 495 | 517 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+++++tGtCkyG++CkF H+p XP_013586043.1 495 NCPYYMKTGTCKYGATCKFDHPP 517 7********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.258 | 184 | 212 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-5 | 186 | 211 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.23 | 186 | 211 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-7 | 187 | 210 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.826 | 235 | 263 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2E-4 | 235 | 262 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-7 | 237 | 262 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.85E-5 | 240 | 262 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.4E-4 | 241 | 260 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.601 | 278 | 306 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.7E-6 | 278 | 305 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.8E-10 | 281 | 305 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.1E-5 | 282 | 306 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.5E-5 | 283 | 304 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.605 | 353 | 381 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.5E-6 | 353 | 380 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 357 | 381 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.9E-10 | 357 | 380 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.4E-5 | 359 | 380 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.788 | 437 | 465 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.4E-7 | 437 | 464 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-10 | 439 | 463 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.13E-6 | 439 | 468 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-5 | 443 | 465 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.375 | 490 | 518 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.1E-7 | 490 | 517 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.77E-6 | 494 | 517 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.8E-11 | 494 | 517 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-5 | 496 | 515 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 542 aa Download sequence Send to blast |
MAAHRHQLFT YALQPSLAAA STVSPAPPPP QPLPQPQQSL SLSSLYASSA ADRYYPDATF 60 RFLSRDGSEA LTNYQATVAS SSSSSAMYHH HHLPNAAAAS HLAYPPQLIH QEAWPPGVEP 120 PAAAAAAVEP LPPGVKRTSE ALYYPTLYGA HNPMGQTEAW YTTDYLTKRL KLESTSHLPV 180 YPQRAGEKDC THYMQTRTCK FGEGCKFDHP VWVPEGGIPD WKEAPVVPND EYPERPGEPD 240 CPYYIKTQRC KYGLRCKFNH PKTAAAVTVE TPDALPERPS EPPCTFYMKT GKCKFGLTCK 300 FHHPKDIQLP SSSQDNGSTE AVTSEPDVTN NPHVTFAPAA YYNSKGLPAR PILQAEVDCP 360 FYLKTGSCKY GATCRYNHPE RTAFTPQAAG INYPLVSPTS ASVNLGLINS AASLYQTLAQ 420 PTNLLQLGAL TATYPQRPGQ PECDYYMKTG ECKFGERCRF HHPADRLNAT SKQAPQQPNV 480 KLSLAGYPRR EGAQNCPYYM KTGTCKYGAT CKFDHPPPGE VMAKTASEAE ADAAGGATDT 540 TQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013586043.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013586043.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X5 | ||||
Refseq | XP_013685660.1 | 0.0 | zinc finger CCCH domain-containing protein 37 isoform X5 | ||||
Swissprot | Q941Q3 | 0.0 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A0A3N6TDT9 | 0.0 | A0A3N6TDT9_BRACR; Uncharacterized protein | ||||
STRING | Bo5g133310.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 0.0 | floral homeotic protein (HUA1) |