PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013585984.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-X1
Protein Properties Length: 1118aa    MW: 121909 Da    PI: 8.0863
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013585984.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X123.89.8e-08321339119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+H+C+k+CH GpC+pC+
  XP_013585984.1 321 CGRHQCEKTCHVGPCDPCQ 339
                     ******************6 PP
2zf-NF-X118.16e-06385402118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CG+H C++ CH+GpC+ C
  XP_013585984.1 385 CGNHFCSEVCHPGPCGDC 402
                     ****************99 PP
3zf-NF-X125.62.6e-08444461118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CG H+C++ CH G+CppC
  XP_013585984.1 444 CGLHTCNEVCHSGDCPPC 461
                     ****************** PP
4zf-NF-X118.64.1e-06542560119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+H+C++lCH G CppC 
  XP_013585984.1 542 CGQHSCESLCHSGHCPPCL 560
                     ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578508.12E-6141212No hitNo description
PROSITE profilePS500168.858150211IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590153208IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.509153209IPR001841Zinc finger, RING-type
CDDcd060084.53E-6242304No hitNo description
SMARTSM004380.21266284IPR000967Zinc finger, NF-X1-type
PfamPF014228.1268283IPR000967Zinc finger, NF-X1-type
CDDcd060081.17E-12311359No hitNo description
PfamPF014229.2E-6321338IPR000967Zinc finger, NF-X1-type
SMARTSM004386.4E-5321340IPR000967Zinc finger, NF-X1-type
CDDcd060083.76E-9375420No hitNo description
PfamPF014227.2E-5385402IPR000967Zinc finger, NF-X1-type
SMARTSM004382.6E-5385404IPR000967Zinc finger, NF-X1-type
CDDcd060084.30E-14434481No hitNo description
PfamPF014225.2E-7444461IPR000967Zinc finger, NF-X1-type
SMARTSM004382.9E-6444463IPR000967Zinc finger, NF-X1-type
PfamPF0142218503514IPR000967Zinc finger, NF-X1-type
SMARTSM0043877503534IPR000967Zinc finger, NF-X1-type
CDDcd060085.99E-10532584No hitNo description
PfamPF014221.0E-4542559IPR000967Zinc finger, NF-X1-type
SMARTSM004382.0E-4542561IPR000967Zinc finger, NF-X1-type
CDDcd060081.27E-6589636No hitNo description
PfamPF0142223599616IPR000967Zinc finger, NF-X1-type
SMARTSM004380.079599617IPR000967Zinc finger, NF-X1-type
PfamPF014220.0049652667IPR000967Zinc finger, NF-X1-type
SMARTSM004380.018652682IPR000967Zinc finger, NF-X1-type
CDDcd060088.53E-5680729No hitNo description
SMARTSM004380.014691712IPR000967Zinc finger, NF-X1-type
PfamPF014220.43692710IPR000967Zinc finger, NF-X1-type
PfamPF014241.9E-4824888IPR001374R3H domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1118 aa     Download sequence    Send to blast
MSSQVRRDRR HQSSQQTWVP RGASTPVAVV NEPSHPPANN TAGVSETVGL GAASRPVYPQ  60
RQHNGSVRLS YNQHQRNNNV VATPPPPNRQ RRNNIAPGAT LPDDNRQRVG SRTRPVYQGK  120
RVAKEDNIAL TDPNLPQLVQ EIQEKLVKSS IECMICYDKV GRAANIWSCS SCYSIFHMHC  180
IKKWARAPTS IDLLAEKNQG DNWRCPGCQS VQLTSSREIC YRCFCGKRKD PPSDPYLTPH  240
SCGEPCGKPL EKEFAAAAET TSENLCPHIC VLQCHPGPCP PCKAFAPPRS CPCGKKTVHT  300
RCSERRSLLV CGQRCEKLLN CGRHQCEKTC HVGPCDPCQV LVNATCFCKK KVETVICGDM  360
NVKGELKVED GVYSCNLNCG KPLGCGNHFC SEVCHPGPCG DCDLLPSRVK TCYCGKTRLE  420
EQTRQSCLDP IPSCSNLCSK LLPCGLHTCN EVCHSGDCPP CLVQVNQKCR CGSTSRTVEC  480
YITTSSETDK FVCSKPCGRK KNCGRHRCSE RCCPLLNAKK NDLSGDWDEH VCQLPCGKKL  540
RCGQHSCESL CHSGHCPPCL EMIFTDLTCS CGNTSIPPPL PCGTPVPSCQ LPCSIPQPCG  600
HSATHGCHFG DCPPCSAPVE KKCVGGHVVL RNIPCGLKDI RCNKICGKTR RCGMHACART  660
CHPEACDTYS ESEAGLRVTC GQTCSAPRRD CRHTCAALCH PSQPCPDSRC EFPVTITCSC  720
GRITATVPCD AGGGTASNLS IDSIYEASVL QKLPTTLQPV ESSGNRIPLG QRKLSCDDEC  780
AKLERKRVLQ DAFDITPPNL DSLHFSENAA MTEIISDIYR RDPKWVLAVE ERFKYLVLGK  840
ARGSTSTLKV HVFCPMQKDK RDTVRLLAER WKLAVSNAGW EPKRFTVVHV TQKSKPPTRI  900
IGARGGAVSL GGPHPPSFDP LVDMDPRLVV SLLDLPREAN ISALVLRFGG ECELVWLNDK  960
NALAVFHDHA RAATAMRRLD HGSVYHGAVV VQNGPQSPTL GGNAWGKLPS SSSWDVQKAN  1020
PWKKAVIQES DENWGAEDSP IGGSSTDIQA AAWRSAPSNN PVVTSVNRWS VLEPETPNTS  1080
GLQPLVRTEG SSSSKAAGKQ PVEGSSEEVV DDWEKVCE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}.
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013585984.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013585984.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A0D3C8Z20.0A0A0D3C8Z2_BRAOL; Uncharacterized protein
STRINGBo5g010600.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1