PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013585975.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 798aa MW: 89193.6 Da PI: 5.9991

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013585975.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5.1e-29	517	567	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ XP_013585975.1 517 DKTITLDVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIQRWPSRKIKKV 567 689**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.166	504	587	IPR003035	RWP-RK domain
Pfam	PF02042	1.7E-25	519	567	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.51E-22	691	786	No hit	No description
PROSITE profile	PS51745	28.566	698	781	IPR000270	PB1 domain
SMART	SM00666	2.7E-26	698	781	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	9.9E-21	699	778	No hit	No description
Pfam	PF00564	6.3E-19	699	780	IPR000270	PB1 domain
CDD	cd06407	1.27E-43	699	780	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 798 aa Download sequence Send to blast
MDTEFMDGLL LDGCWLETTD GSEFLNLPPF DPSSFMWSPP QDTSAICTSG VVSQTYGQDC 60 ADEFQYNKRW WIGPGGGGGS SVTERLVQAV EHIKDYTTER GSLIQLWVPV NRGGKRVLTT 120 KEQPFSHDPM CQRLANYREI SVNYHFSAEQ DDSKALAGLP GRVFLGKLPE WTPDVRFFKS 180 EEYPRVQHAQ DCDVRGTLAI PVFEQGSKIC LGVIEVVMTT EMVKLKPELE SICRALQAVD 240 LRSTELPVPP SLKGCDLSYK AALPEIRNLL RCACETHKLP LAQTWVSCLQ QSKSGCRHND 300 ENYIHCVSTI DEACYLGDPT VREFQEACSE HHLLKGQGVA GQAFLTNGPC FSPDVANYKK 360 SEYPLSHHAN MFGLHGAVAI RLRCIHTGDA DFVLEFFLPK DCDNMGEQRK MLNALSTIMA 420 HVPRSLRTVT DKELEEESEV VEREEVVTPK VENTPELHHS NPQNLGLVFD GGDKLPNDGF 480 GLKRGYDYTR DANINESNTF TIGGFNSMAE KKRTKADKTI TLDVLRQYFA GSLKDAAKSI 540 GVCPTTLKRI CRQHGIQRWP SRKIKKVGHS LQKIQRVIDS VEGVSGPLPI GSFYANFPNL 600 EPSQQAKTSP PPPPPPPLQL SKSPVSQYSH SSSSSQCCSS ETQLNSSATA HPSQGDTFRK 660 VSSEVDLQSS VLTLSSLENI PQGQGTHLLS SSSQDDDFLR IKVSYGEENI RFRMKNSRRL 720 SDLLWEIGKR FSIEDMSRYD LKYLDEDNEW VLLTCDEDVE ECVDVCRTTP SHTIKLLLHA 780 SSHHFPERSS PTGYTLWQ

Sequence ? help Back to Top

Protein Sequence Length: 798 aa Download sequence Send to blast

MDTEFMDGLL LDGCWLETTD GSEFLNLPPF DPSSFMWSPP QDTSAICTSG VVSQTYGQDC  60
ADEFQYNKRW WIGPGGGGGS SVTERLVQAV EHIKDYTTER GSLIQLWVPV NRGGKRVLTT  120
KEQPFSHDPM CQRLANYREI SVNYHFSAEQ DDSKALAGLP GRVFLGKLPE WTPDVRFFKS  180
EEYPRVQHAQ DCDVRGTLAI PVFEQGSKIC LGVIEVVMTT EMVKLKPELE SICRALQAVD  240
LRSTELPVPP SLKGCDLSYK AALPEIRNLL RCACETHKLP LAQTWVSCLQ QSKSGCRHND  300
ENYIHCVSTI DEACYLGDPT VREFQEACSE HHLLKGQGVA GQAFLTNGPC FSPDVANYKK  360
SEYPLSHHAN MFGLHGAVAI RLRCIHTGDA DFVLEFFLPK DCDNMGEQRK MLNALSTIMA  420
HVPRSLRTVT DKELEEESEV VEREEVVTPK VENTPELHHS NPQNLGLVFD GGDKLPNDGF  480
GLKRGYDYTR DANINESNTF TIGGFNSMAE KKRTKADKTI TLDVLRQYFA GSLKDAAKSI  540
GVCPTTLKRI CRQHGIQRWP SRKIKKVGHS LQKIQRVIDS VEGVSGPLPI GSFYANFPNL  600
EPSQQAKTSP PPPPPPPLQL SKSPVSQYSH SSSSSQCCSS ETQLNSSATA HPSQGDTFRK  660
VSSEVDLQSS VLTLSSLENI PQGQGTHLLS SSSQDDDFLR IKVSYGEENI RFRMKNSRRL  720
SDLLWEIGKR FSIEDMSRYD LKYLDEDNEW VLLTCDEDVE ECVDVCRTTP SHTIKLLLHA  780
SSHHFPERSS PTGYTLWQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013585975.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189247	0.0	AC189247.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB018K09, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013585973.1	0.0	PREDICTED: protein NLP4 isoform X1
Refseq	XP_013585974.1	0.0	PREDICTED: protein NLP4 isoform X1
Refseq	XP_013717638.1	0.0	protein NLP4
Refseq	XP_013717640.1	0.0	protein NLP4
Refseq	XP_022566261.1	0.0	protein NLP4
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	A0A0D3CBU5	0.0	A0A0D3CBU5_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6ETJ2	0.0	A0A3P6ETJ2_BRAOL; Uncharacterized protein
STRING	Bo5g030540.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein