PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013585975.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Nin-like
Protein Properties Length: 798aa    MW: 89193.6 Da    PI: 5.9991
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013585975.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.85.1e-29517567252
          RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      k+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++
  XP_013585975.1 517 DKTITLDVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIQRWPSRKIKKV 567
                     689**********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.166504587IPR003035RWP-RK domain
PfamPF020421.7E-25519567IPR003035RWP-RK domain
SuperFamilySSF542771.51E-22691786No hitNo description
PROSITE profilePS5174528.566698781IPR000270PB1 domain
SMARTSM006662.7E-26698781IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2409.9E-21699778No hitNo description
PfamPF005646.3E-19699780IPR000270PB1 domain
CDDcd064071.27E-43699780No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 798 aa     Download sequence    Send to blast
MDTEFMDGLL LDGCWLETTD GSEFLNLPPF DPSSFMWSPP QDTSAICTSG VVSQTYGQDC  60
ADEFQYNKRW WIGPGGGGGS SVTERLVQAV EHIKDYTTER GSLIQLWVPV NRGGKRVLTT  120
KEQPFSHDPM CQRLANYREI SVNYHFSAEQ DDSKALAGLP GRVFLGKLPE WTPDVRFFKS  180
EEYPRVQHAQ DCDVRGTLAI PVFEQGSKIC LGVIEVVMTT EMVKLKPELE SICRALQAVD  240
LRSTELPVPP SLKGCDLSYK AALPEIRNLL RCACETHKLP LAQTWVSCLQ QSKSGCRHND  300
ENYIHCVSTI DEACYLGDPT VREFQEACSE HHLLKGQGVA GQAFLTNGPC FSPDVANYKK  360
SEYPLSHHAN MFGLHGAVAI RLRCIHTGDA DFVLEFFLPK DCDNMGEQRK MLNALSTIMA  420
HVPRSLRTVT DKELEEESEV VEREEVVTPK VENTPELHHS NPQNLGLVFD GGDKLPNDGF  480
GLKRGYDYTR DANINESNTF TIGGFNSMAE KKRTKADKTI TLDVLRQYFA GSLKDAAKSI  540
GVCPTTLKRI CRQHGIQRWP SRKIKKVGHS LQKIQRVIDS VEGVSGPLPI GSFYANFPNL  600
EPSQQAKTSP PPPPPPPLQL SKSPVSQYSH SSSSSQCCSS ETQLNSSATA HPSQGDTFRK  660
VSSEVDLQSS VLTLSSLENI PQGQGTHLLS SSSQDDDFLR IKVSYGEENI RFRMKNSRRL  720
SDLLWEIGKR FSIEDMSRYD LKYLDEDNEW VLLTCDEDVE ECVDVCRTTP SHTIKLLLHA  780
SSHHFPERSS PTGYTLWQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00154DAPTransfer from AT1G20640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013585975.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892470.0AC189247.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB018K09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013585973.10.0PREDICTED: protein NLP4 isoform X1
RefseqXP_013585974.10.0PREDICTED: protein NLP4 isoform X1
RefseqXP_013717638.10.0protein NLP4
RefseqXP_013717640.10.0protein NLP4
RefseqXP_022566261.10.0protein NLP4
SwissprotQ9LE380.0NLP4_ARATH; Protein NLP4
TrEMBLA0A0D3CBU50.0A0A0D3CBU5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ETJ20.0A0A3P6ETJ2_BRAOL; Uncharacterized protein
STRINGBo5g030540.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.20.0Nin-like family protein