PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013585974.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 810aa MW: 90558 Da PI: 5.8429

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013585974.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5.2e-29	529	579	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ XP_013585974.1 529 DKTITLDVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIQRWPSRKIKKV 579 689**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.166	516	599	IPR003035	RWP-RK domain
Pfam	PF02042	1.8E-25	531	579	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.54E-22	703	798	No hit	No description
PROSITE profile	PS51745	28.566	710	793	IPR000270	PB1 domain
SMART	SM00666	2.7E-26	710	793	IPR000270	PB1 domain
Pfam	PF00564	6.4E-19	711	792	IPR000270	PB1 domain
CDD	cd06407	1.39E-43	711	792	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.0E-20	711	790	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 810 aa Download sequence Send to blast
MEDSFLQTQN AVMDTEFMDG LLLDGCWLET TDGSEFLNLP PFDPSSFMWS PPQDTSAICT 60 SGVVSQTYGQ DCADEFQYNK RWWIGPGGGG GSSVTERLVQ AVEHIKDYTT ERGSLIQLWV 120 PVNRGGKRVL TTKEQPFSHD PMCQRLANYR EISVNYHFSA EQDDSKALAG LPGRVFLGKL 180 PEWTPDVRFF KSEEYPRVQH AQDCDVRGTL AIPVFEQGSK ICLGVIEVVM TTEMVKLKPE 240 LESICRALQA VDLRSTELPV PPSLKGCDLS YKAALPEIRN LLRCACETHK LPLAQTWVSC 300 LQQSKSGCRH NDENYIHCVS TIDEACYLGD PTVREFQEAC SEHHLLKGQG VAGQAFLTNG 360 PCFSPDVANY KKSEYPLSHH ANMFGLHGAV AIRLRCIHTG DADFVLEFFL PKDCDNMGEQ 420 RKMLNALSTI MAHVPRSLRT VTDKELEEES EVVEREEVVT PKVENTPELH HSNPQNLGLV 480 FDGGDKLPND GFGLKRGYDY TRDANINESN TFTIGGFNSM AEKKRTKADK TITLDVLRQY 540 FAGSLKDAAK SIGVCPTTLK RICRQHGIQR WPSRKIKKVG HSLQKIQRVI DSVEGVSGPL 600 PIGSFYANFP NLEPSQQAKT SPPPPPPPPL QLSKSPVSQY SHSSSSSQCC SSETQLNSSA 660 TAHPSQGDTF RKVSSEVDLQ SSVLTLSSLE NIPQGQGTHL LSSSSQDDDF LRIKVSYGEE 720 NIRFRMKNSR RLSDLLWEIG KRFSIEDMSR YDLKYLDEDN EWVLLTCDED VEECVDVCRT 780 TPSHTIKLLL HASSHHFPER SSPTGYTLWQ

Sequence ? help Back to Top

Protein Sequence Length: 810 aa Download sequence Send to blast

MEDSFLQTQN AVMDTEFMDG LLLDGCWLET TDGSEFLNLP PFDPSSFMWS PPQDTSAICT  60
SGVVSQTYGQ DCADEFQYNK RWWIGPGGGG GSSVTERLVQ AVEHIKDYTT ERGSLIQLWV  120
PVNRGGKRVL TTKEQPFSHD PMCQRLANYR EISVNYHFSA EQDDSKALAG LPGRVFLGKL  180
PEWTPDVRFF KSEEYPRVQH AQDCDVRGTL AIPVFEQGSK ICLGVIEVVM TTEMVKLKPE  240
LESICRALQA VDLRSTELPV PPSLKGCDLS YKAALPEIRN LLRCACETHK LPLAQTWVSC  300
LQQSKSGCRH NDENYIHCVS TIDEACYLGD PTVREFQEAC SEHHLLKGQG VAGQAFLTNG  360
PCFSPDVANY KKSEYPLSHH ANMFGLHGAV AIRLRCIHTG DADFVLEFFL PKDCDNMGEQ  420
RKMLNALSTI MAHVPRSLRT VTDKELEEES EVVEREEVVT PKVENTPELH HSNPQNLGLV  480
FDGGDKLPND GFGLKRGYDY TRDANINESN TFTIGGFNSM AEKKRTKADK TITLDVLRQY  540
FAGSLKDAAK SIGVCPTTLK RICRQHGIQR WPSRKIKKVG HSLQKIQRVI DSVEGVSGPL  600
PIGSFYANFP NLEPSQQAKT SPPPPPPPPL QLSKSPVSQY SHSSSSSQCC SSETQLNSSA  660
TAHPSQGDTF RKVSSEVDLQ SSVLTLSSLE NIPQGQGTHL LSSSSQDDDF LRIKVSYGEE  720
NIRFRMKNSR RLSDLLWEIG KRFSIEDMSR YDLKYLDEDN EWVLLTCDED VEECVDVCRT  780
TPSHTIKLLL HASSHHFPER SSPTGYTLWQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013585974.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189247	0.0	AC189247.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB018K09, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013585973.1	0.0	PREDICTED: protein NLP4 isoform X1
Refseq	XP_013585974.1	0.0	PREDICTED: protein NLP4 isoform X1
Refseq	XP_013717638.1	0.0	protein NLP4
Refseq	XP_013717640.1	0.0	protein NLP4
Refseq	XP_022566261.1	0.0	protein NLP4
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	A0A0D3CBU5	0.0	A0A0D3CBU5_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6ETJ2	0.0	A0A3P6ETJ2_BRAOL; Uncharacterized protein
STRING	Bo5g030540.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein