PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013585908.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 429aa    MW: 47218.5 Da    PI: 4.6064
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013585908.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573118.34.1e-37118217298
          DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgk.spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                     lfqrlw++eDei lL+G++d+ ++++g  s++  d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq++fe+s+
  XP_013585908.1 118 LFQRLWTDEDEIELLRGFLDYvATHRGGnSSHPpDTAPFYEMIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQSTFEISR 212
                     79*******************7666776355558************************************************************* PP

          DUF573  94 kiWgs 98 
                     kiW++
  XP_013585908.1 213 KIWNQ 217
                     ***85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.9E-33119216IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MTSDQRDVVF SLESPDLEEG AAGESDTDEN DDVAIPETNE EPEEDDPEEE DLTTAVTVSA  60
SSTDAVTVAL PAGSAVPVSV IPVDSSDPKW HRVTEIVHHQ RPPPPPQPQP PIDDSRRLFQ  120
RLWTDEDEIE LLRGFLDYVA THRGGNSSHP PDTAPFYEMI KSKLQLEFNK NQLVEKLRRL  180
KKKYRNVMSK ISSGKEVFFK SPHDQSTFEI SRKIWNQTGK IIGFEDNNAM DFEETNTNGN  240
YFNSPGSNPT PSNVEIDSEN GVEKRLMMMS SSSGGSRKRS RSRIGKIEED NKPVITPSDV  300
QTPNAASNVN LNEPATAVVG GNIGVLIEET VKNCVSPVIK EMMNGTTSMM MAAMGGGGGN  360
GHGFGSFSPV FTRPLGYGVE GGGGNKAVSD ERWRKQQILE LEVYSRRLEL VQEQIRATLH  420
ELKTMPSGV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277282KRSRSR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.97970.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013585908.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013585908.10.0PREDICTED: uncharacterized protein LOC106294796
SwissprotQ9CAV70.0STKLJ_ARATH; Probable transcription factor At3g04930
TrEMBLA0A0D3CMQ70.0A0A0D3CMQ7_BRAOL; Uncharacterized protein
STRINGBo5g146880.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.11e-147DNA-binding storekeeper protein-related transcriptional regulator