PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013585828.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | SBP | ||||||||
Protein Properties | Length: 1028aa MW: 113747 Da PI: 8.3989 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 124.4 | 4.6e-39 | 129 | 206 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C +dls+ k+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+++ XP_013585828.1 129 VCQVDNCCQDLSHGKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTTQ 206 6**************************************************************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.3E-32 | 123 | 191 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.573 | 127 | 204 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.83E-35 | 128 | 206 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.4E-27 | 130 | 203 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:1.25.40.20 | 5.0E-8 | 782 | 929 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 4.86E-10 | 782 | 916 | No hit | No description |
SuperFamily | SSF48403 | 3.91E-8 | 785 | 924 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 10.312 | 825 | 935 | IPR020683 | Ankyrin repeat-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1028 aa Download sequence Send to blast |
MEEVGAQVAA PLFIHQSLSP MGRKRNLYHH QMPNRLVPPS QPEQRRDEWN SNLWDWDSRR 60 FEAKPVDAEP LRLGSQSQSQ TQFDLTSRKV GEERGLDLNL GSCLNAAEAA RPSKKGRSGS 120 PGTGGNYPVC QVDNCCQDLS HGKDYHRRHK VCEVHSKATK ALVGKQMQRF CQQCSRFHLL 180 SEFDEGKRSC RRRLAGHNRR RRKTTQPEEV ASGVVAPGNR DSTSNANMDL MALLTALACA 240 QGKNEVRPMG SPAVPQREQL LQILNKINAL PLPMDLVSKL NSIGSLARKN TDHLVANPQN 300 DVNGDSPSTM DLLAVLSETL GSSSPDTLAI LSQGGFGTKE NDKAKLSSYD HVATTNVEKR 360 TVGGERSSSS NQSPSQDSDS HAQDTRSSLS LQLFTSSPED ESRRPAVASS RKYYSSASSN 420 PVEDRSPSSS PVMQELFPLQ RSPETMRSKN HNNTSPVRTG GCLPLDLFGT SNRGAANPNF 480 KGFGQQCGYA SSGSDYSPPS LNSDAQDRTG KIVFKLLDKD PSQLPGTLRT EIYNWLSSIP 540 SEMESYIRPG CVVLSVYVAM SPAAWEQLEQ NLQQRVAVML QDSHSGFWRD SRFIVNTGRQ 600 LASHKNGRIR CSKSWRTWNS PELISVSPVA VVAGEETSLV VRGRSLTNDG ISIRCTQMGS 660 YVSMEASGAA CKRAIFDELN VKCFRVNNTQ PGFLGRCFIE VENGFRGDSF PLIIANASIC 720 KELNRLEEEF HPKSQEQAHH RPTSREETLC FLNELGWLFQ KNQTTEPLEQ SEFSLSRFKF 780 LLVCSVERDY CAVIRTLLDM LVERNVVNDE PNREALDMLA EIQLLNRAVK RKSTKMVELL 840 IHYSVNLGSS KKLVFLPNIT GPGGITPLHL AACTSDSDDM VDLLTNDPQE IGLSSWNSLC 900 DGTGQTPYSY AAMRNNHTYN SLVARKLADK RNKQVSLNIE SEIVVDQLGL SRRSSTEMNK 960 SSCASCATVA LKYRRRASGS HRLFPTPIIH SMLAVATVCV CVCVFMHAFP IVRQGSHFSW 1020 GGLDYGSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-29 | 119 | 203 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in vasculature of aerial parts. Expressed in cotyledons and leaf petioles. {ECO:0000269|PubMed:15703061}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00155 | DAP | Transfer from AT1G20980 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013585828.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353554 | 0.0 | AK353554.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-52-I08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013585827.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 14 | ||||
Refseq | XP_013585828.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 14 | ||||
Swissprot | Q8RY95 | 0.0 | SPL14_ARATH; Squamosa promoter-binding-like protein 14 | ||||
TrEMBL | A0A0D3CBY4 | 0.0 | A0A0D3CBY4_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g030930.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20980.1 | 0.0 | squamosa promoter binding protein-like 14 |
Publications ? help Back to Top | |||
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