PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013585827.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 1028aa    MW: 113747 Da    PI: 8.3989
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013585827.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP124.44.6e-39129206178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +Cqv++C +dls+ k+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+++
  XP_013585827.1 129 VCQVDNCCQDLSHGKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTTQ 206
                     6**************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.3E-32123191IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.573127204IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-35128206IPR004333Transcription factor, SBP-box
PfamPF031104.4E-27130203IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.205.0E-8782929IPR020683Ankyrin repeat-containing domain
CDDcd002044.86E-10782916No hitNo description
SuperFamilySSF484033.91E-8785924IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029710.312825935IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1028 aa     Download sequence    Send to blast
MEEVGAQVAA PLFIHQSLSP MGRKRNLYHH QMPNRLVPPS QPEQRRDEWN SNLWDWDSRR  60
FEAKPVDAEP LRLGSQSQSQ TQFDLTSRKV GEERGLDLNL GSCLNAAEAA RPSKKGRSGS  120
PGTGGNYPVC QVDNCCQDLS HGKDYHRRHK VCEVHSKATK ALVGKQMQRF CQQCSRFHLL  180
SEFDEGKRSC RRRLAGHNRR RRKTTQPEEV ASGVVAPGNR DSTSNANMDL MALLTALACA  240
QGKNEVRPMG SPAVPQREQL LQILNKINAL PLPMDLVSKL NSIGSLARKN TDHLVANPQN  300
DVNGDSPSTM DLLAVLSETL GSSSPDTLAI LSQGGFGTKE NDKAKLSSYD HVATTNVEKR  360
TVGGERSSSS NQSPSQDSDS HAQDTRSSLS LQLFTSSPED ESRRPAVASS RKYYSSASSN  420
PVEDRSPSSS PVMQELFPLQ RSPETMRSKN HNNTSPVRTG GCLPLDLFGT SNRGAANPNF  480
KGFGQQCGYA SSGSDYSPPS LNSDAQDRTG KIVFKLLDKD PSQLPGTLRT EIYNWLSSIP  540
SEMESYIRPG CVVLSVYVAM SPAAWEQLEQ NLQQRVAVML QDSHSGFWRD SRFIVNTGRQ  600
LASHKNGRIR CSKSWRTWNS PELISVSPVA VVAGEETSLV VRGRSLTNDG ISIRCTQMGS  660
YVSMEASGAA CKRAIFDELN VKCFRVNNTQ PGFLGRCFIE VENGFRGDSF PLIIANASIC  720
KELNRLEEEF HPKSQEQAHH RPTSREETLC FLNELGWLFQ KNQTTEPLEQ SEFSLSRFKF  780
LLVCSVERDY CAVIRTLLDM LVERNVVNDE PNREALDMLA EIQLLNRAVK RKSTKMVELL  840
IHYSVNLGSS KKLVFLPNIT GPGGITPLHL AACTSDSDDM VDLLTNDPQE IGLSSWNSLC  900
DGTGQTPYSY AAMRNNHTYN SLVARKLADK RNKQVSLNIE SEIVVDQLGL SRRSSTEMNK  960
SSCASCATVA LKYRRRASGS HRLFPTPIIH SMLAVATVCV CVCVFMHAFP IVRQGSHFSW  1020
GGLDYGSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-29119203184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in vasculature of aerial parts. Expressed in cotyledons and leaf petioles. {ECO:0000269|PubMed:15703061}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013585827.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535540.0AK353554.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-52-I08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013585827.10.0PREDICTED: squamosa promoter-binding-like protein 14
RefseqXP_013585828.10.0PREDICTED: squamosa promoter-binding-like protein 14
SwissprotQ8RY950.0SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBLA0A0D3CBY40.0A0A0D3CBY4_BRAOL; Uncharacterized protein
STRINGBo5g030930.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39992554
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Liu J, et al.
    Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.).
    Front Plant Sci, 2016. 7: p. 21
    [PMID:26870051]