PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013585531.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 180aa MW: 20151.8 Da PI: 4.6868 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.5 | 9.1e-20 | 23 | 73 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +g+Wv+eIr+p r +r++lg+++ +e+Aa+a++aa +++ge XP_013585531.1 23 CYRGVRKRS-WGKWVSEIRVP-----RtaRRIWLGSYDDPEKAARAYDAALFCIRGE 73 8*****888.**********9.....447**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.6E-11 | 23 | 73 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-28 | 23 | 82 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.957 | 23 | 80 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-20 | 23 | 82 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.6E-34 | 23 | 86 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.50E-31 | 24 | 82 | No hit | No description |
PRINTS | PR00367 | 3.0E-9 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-9 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MMPPSTPKSP LLEEAHEDGR FKCYRGVRKR SWGKWVSEIR VPRTARRIWL GSYDDPEKAA 60 RAYDAALFCI RGEKGVFNFP TSKKPELPEG SVRPLSKLDI QTIATNHASS VVSVPSPATP 120 IPETDQVSAS PDASVSTEMM EMADEHYLPV DASVESIFSV EDLHLDNFLM MDIDWIDDLV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-15 | 24 | 80 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00463 | DAP | Transfer from AT4G31060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013585531.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013585531.1 | 1e-131 | PREDICTED: ethylene-responsive transcription factor ERF015-like | ||||
Swissprot | Q6NLD5 | 1e-101 | ERF15_ARATH; Ethylene-responsive transcription factor ERF015 | ||||
TrEMBL | A0A0D3A2Z0 | 1e-129 | A0A0D3A2Z0_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g011650.1 | 1e-130 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14899 | 16 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31060.1 | 4e-98 | ERF family protein |
Publications ? help Back to Top | |||
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