PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013585531.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 180aa    MW: 20151.8 Da    PI: 4.6868
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013585531.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.1e-202373256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
                    +y+GVr ++ +g+Wv+eIr+p     r  +r++lg+++ +e+Aa+a++aa  +++ge
  XP_013585531.1 23 CYRGVRKRS-WGKWVSEIRVP-----RtaRRIWLGSYDDPEKAARAYDAALFCIRGE 73
                    8*****888.**********9.....447**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-112373IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-282382IPR001471AP2/ERF domain
PROSITE profilePS5103221.9572380IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-202382IPR016177DNA-binding domain
SMARTSM003806.6E-342386IPR001471AP2/ERF domain
CDDcd000182.50E-312482No hitNo description
PRINTSPR003673.0E-92435IPR001471AP2/ERF domain
PRINTSPR003673.0E-94662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MMPPSTPKSP LLEEAHEDGR FKCYRGVRKR SWGKWVSEIR VPRTARRIWL GSYDDPEKAA  60
RAYDAALFCI RGEKGVFNFP TSKKPELPEG SVRPLSKLDI QTIATNHASS VVSVPSPATP  120
IPETDQVSAS PDASVSTEMM EMADEHYLPV DASVESIFSV EDLHLDNFLM MDIDWIDDLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1524801572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00463DAPTransfer from AT4G31060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013585531.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013585531.11e-131PREDICTED: ethylene-responsive transcription factor ERF015-like
SwissprotQ6NLD51e-101ERF15_ARATH; Ethylene-responsive transcription factor ERF015
TrEMBLA0A0D3A2Z01e-129A0A0D3A2Z0_BRAOL; Uncharacterized protein
STRINGBo1g011650.11e-130(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148991620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.14e-98ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]