PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013585499.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HB-other

Protein Properties

Length: 1661aa MW: 186159 Da PI: 5.0778

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013585499.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.5	1.1e-18	42	97	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ ql++Le++++++ yps+++r+eL++kl+L++rq ++WF+ rR k+kk XP_013585499.1 42 PKRQMKTPFQLQTLEQVYAEETYPSEATRAELSEKLDLSDRQLQMWFCHRRLKDKK 97 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.6E-17	21	97	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.05E-16	33	97	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.358	38	98	IPR001356	Homeobox domain
SMART	SM00389	1.6E-18	40	102	IPR001356	Homeobox domain
Pfam	PF00046	2.3E-16	42	97	IPR001356	Homeobox domain
CDD	cd00086	1.39E-14	43	97	No hit	No description
SMART	SM00571	1.8E-24	523	582	IPR018501	DDT domain
PROSITE profile	PS50827	18.031	523	582	IPR018501	DDT domain
Pfam	PF02791	1.9E-18	524	579	IPR018501	DDT domain
Pfam	PF05066	4.2E-15	707	774	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	3.3E-6	914	955	IPR028942	WHIM1 domain
Pfam	PF15613	3.8E-13	1064	1136	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1661 aa Download sequence Send to blast
MEMGSDGEED QIRSVADSNH KNKKMKKVVD ASNSKDSPSS KPKRQMKTPF QLQTLEQVYA 60 EETYPSEATR AELSEKLDLS DRQLQMWFCH RRLKDKKDGQ VKKTPKPSPV QPASAVPALS 120 LPAAELDSGS DSGSGSGCSP YSDPRREFAS GSSNSPAEYE TMGSAGYEPP RSSVMVRRAV 180 ACIEAQLGEP LRDDGPILGM EFDPLPPGAF GTPIAMQTHQ GHPYESKMYE PHDVRPRRSQ 240 AATSSFHDQQ SLNDPSSFTP DMYGRYSESH ARGVDYEISR PRSSSFMQGN GPLPKSYGNS 300 SRNCSTSQQD MPSPILPSAR GDSFLLERDS SGLRAEDPYL LSDGINDGRL GRGSGQKDLE 360 KLELQRKRNE ERMRKEMERY ERERRKEEER LMRERIKEEE RLQREQRREM ERRERFLQRE 420 NERAEKNKQK EEIRREKEAI RRKIAVEKAT ARRIAKEAMD LIEDEQLELM DLAASSKGLS 480 SVIQLDHDTL QNLDLYRDSL STFPPKALQL KMPFTISPWK DSEENVGNLL MVWRFLISFS 540 DVLDLWPFTL DEFIQALHDY DSRLLGEIHI TLLRSIIRDI EDVARTPYSG IGNNQYTTAN 600 PEGGHPQIVE GAYAWGFDIR SWKKHLNPLT WPEILRQLGL SSGFGPRLKK NNSRVTHTGE 660 KDELQAKGCE DIISTLRSGS AAESAFASML EKGLLAPRKS RHRLTPGTVK FAAFHVLSLE 720 GSKGLTVIEL ADKIQKSGLR DLRTSKTPEA SISVALTRDV KLFERIAPST YCVRAPYVKD 780 PADGEAILAE ARKKIKAFEN GLAGPEDVND LEKDEDFECD IDEDPEVDDL ATLPSASKSA 840 DLGEANGLSG KGGEIMFSDV KANVKSEVEK EVSSPPTSSM KTIVPQCHSE QGKDAAVSCM 900 DNKNAVVEDI KQGKSWVLGL TEGDYCHLSV QERLEALVAL VGIANEGNSI RASLEDRLEA 960 ANSLKKQMWA EAQLDNSCMR DVLKFDIQHS TREIDGFNRD PSQLVDETKP PLEVVSNDVH 1020 KLSTERGSVY QEGNISQENC SSKRSRSQLK SYISHKAEEV YPYRSLPLGQ DRRHNRYWHF 1080 AASASKSDPC SGLIFVELHD SKWRLIDSAE AFDTLVASLD MRGVRESHLR IMLQKIEGAF 1140 KENACKKINL VRNPSLKEDS VSPFSAILGS SSDSMGVSTS VRVELGRRND KEKENLLKRF 1200 HSFQRWMWTE TYSSVPSCAR KDGKKRCELL ATCEVCVASY LSEYTHCTSC HQRLDMADSS 1260 ERKIADSGLA VSPLPFGVRL LKALLVFLEA SVPDEAYESF WTEEKRKNWG FRLNASSSPE 1320 ELLQVLTYLE SAIKKESLSS NFLSAKELLG AAGATADPGS VDVFPWIPKT VSAVALRLSD 1380 LDASIVYVKP EKPEPVPEDE KEQISLFPGN SLLKGKGPKE QEDQDEVVPN SGKKSSKRRV 1440 IFGSGSNKKA KKKKVLGGNG RFVAGRSNVA VNRNIMSVEL NHQVPGRGKR TVRKRPERND 1500 EDNYRLVSRM ADIVKPTSEE DEEEQTFRGI DQDWAGETPR EMDEEWASET PNRVMTPMQV 1560 DGESDDNSVG VQSEDDDDEG QFVSYSQRNK WGFDWNSNPN EAMEDVEEEE VAGVEQVQRE 1620 YVAELSESSE DEEDDDLPAA SNNAAANNYD RESEDYSSSD S

Sequence ? help Back to Top

Protein Sequence Length: 1661 aa Download sequence Send to blast

MEMGSDGEED QIRSVADSNH KNKKMKKVVD ASNSKDSPSS KPKRQMKTPF QLQTLEQVYA  60
EETYPSEATR AELSEKLDLS DRQLQMWFCH RRLKDKKDGQ VKKTPKPSPV QPASAVPALS  120
LPAAELDSGS DSGSGSGCSP YSDPRREFAS GSSNSPAEYE TMGSAGYEPP RSSVMVRRAV  180
ACIEAQLGEP LRDDGPILGM EFDPLPPGAF GTPIAMQTHQ GHPYESKMYE PHDVRPRRSQ  240
AATSSFHDQQ SLNDPSSFTP DMYGRYSESH ARGVDYEISR PRSSSFMQGN GPLPKSYGNS  300
SRNCSTSQQD MPSPILPSAR GDSFLLERDS SGLRAEDPYL LSDGINDGRL GRGSGQKDLE  360
KLELQRKRNE ERMRKEMERY ERERRKEEER LMRERIKEEE RLQREQRREM ERRERFLQRE  420
NERAEKNKQK EEIRREKEAI RRKIAVEKAT ARRIAKEAMD LIEDEQLELM DLAASSKGLS  480
SVIQLDHDTL QNLDLYRDSL STFPPKALQL KMPFTISPWK DSEENVGNLL MVWRFLISFS  540
DVLDLWPFTL DEFIQALHDY DSRLLGEIHI TLLRSIIRDI EDVARTPYSG IGNNQYTTAN  600
PEGGHPQIVE GAYAWGFDIR SWKKHLNPLT WPEILRQLGL SSGFGPRLKK NNSRVTHTGE  660
KDELQAKGCE DIISTLRSGS AAESAFASML EKGLLAPRKS RHRLTPGTVK FAAFHVLSLE  720
GSKGLTVIEL ADKIQKSGLR DLRTSKTPEA SISVALTRDV KLFERIAPST YCVRAPYVKD  780
PADGEAILAE ARKKIKAFEN GLAGPEDVND LEKDEDFECD IDEDPEVDDL ATLPSASKSA  840
DLGEANGLSG KGGEIMFSDV KANVKSEVEK EVSSPPTSSM KTIVPQCHSE QGKDAAVSCM  900
DNKNAVVEDI KQGKSWVLGL TEGDYCHLSV QERLEALVAL VGIANEGNSI RASLEDRLEA  960
ANSLKKQMWA EAQLDNSCMR DVLKFDIQHS TREIDGFNRD PSQLVDETKP PLEVVSNDVH  1020
KLSTERGSVY QEGNISQENC SSKRSRSQLK SYISHKAEEV YPYRSLPLGQ DRRHNRYWHF  1080
AASASKSDPC SGLIFVELHD SKWRLIDSAE AFDTLVASLD MRGVRESHLR IMLQKIEGAF  1140
KENACKKINL VRNPSLKEDS VSPFSAILGS SSDSMGVSTS VRVELGRRND KEKENLLKRF  1200
HSFQRWMWTE TYSSVPSCAR KDGKKRCELL ATCEVCVASY LSEYTHCTSC HQRLDMADSS  1260
ERKIADSGLA VSPLPFGVRL LKALLVFLEA SVPDEAYESF WTEEKRKNWG FRLNASSSPE  1320
ELLQVLTYLE SAIKKESLSS NFLSAKELLG AAGATADPGS VDVFPWIPKT VSAVALRLSD  1380
LDASIVYVKP EKPEPVPEDE KEQISLFPGN SLLKGKGPKE QEDQDEVVPN SGKKSSKRRV  1440
IFGSGSNKKA KKKKVLGGNG RFVAGRSNVA VNRNIMSVEL NHQVPGRGKR TVRKRPERND  1500
EDNYRLVSRM ADIVKPTSEE DEEEQTFRGI DQDWAGETPR EMDEEWASET PNRVMTPMQV  1560
DGESDDNSVG VQSEDDDDEG QFVSYSQRNK WGFDWNSNPN EAMEDVEEEE VAGVEQVQRE  1620
YVAELSESSE DEEDDDLPAA SNNAAANNYD RESEDYSSSD S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	90	97	RRLKDKKD
2	1436	1453	KRRVIFGSGSNKKAKKKK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269\|PubMed:22694359}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013585499.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013585499.1	0.0	PREDICTED: uncharacterized protein LOC106294486 isoform X2
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A0D3CEA5	0.0	A0A0D3CEA5_BRAOL; Uncharacterized protein
STRING	Bo5g055970.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1