PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013585498.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HB-other

Protein Properties

Length: 1673aa MW: 187567 Da PI: 5.1626

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013585498.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.5	1.1e-18	42	97	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ ql++Le++++++ yps+++r+eL++kl+L++rq ++WF+ rR k+kk XP_013585498.1 42 PKRQMKTPFQLQTLEQVYAEETYPSEATRAELSEKLDLSDRQLQMWFCHRRLKDKK 97 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.6E-17	21	97	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.1E-16	33	97	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.358	38	98	IPR001356	Homeobox domain
SMART	SM00389	1.6E-18	40	102	IPR001356	Homeobox domain
Pfam	PF00046	2.3E-16	42	97	IPR001356	Homeobox domain
CDD	cd00086	1.48E-14	43	97	No hit	No description
SMART	SM00571	1.8E-24	535	594	IPR018501	DDT domain
PROSITE profile	PS50827	18.031	535	594	IPR018501	DDT domain
Pfam	PF02791	1.9E-18	536	591	IPR018501	DDT domain
Pfam	PF05066	4.2E-15	719	786	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	3.4E-6	926	967	IPR028942	WHIM1 domain
Pfam	PF15613	3.8E-13	1076	1148	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1673 aa Download sequence Send to blast
MEMGSDGEED QIRSVADSNH KNKKMKKVVD ASNSKDSPSS KPKRQMKTPF QLQTLEQVYA 60 EETYPSEATR AELSEKLDLS DRQLQMWFCH RRLKDKKDGQ VKKTPKPSPV QPASAVPALS 120 LPAAELDSGS DSGSGSGCSP YSDPRREFAS GSSNSPAEYE TMGSAGYEPP RSSVMVRRAV 180 ACIEAQLGEP LRDDGPILGM EFDPLPPGAF GTPIAMQTHQ GHPYESKMYE PHDVRPRRSQ 240 AATSSFHDQQ SLNDPSSFTP DMYGRYSESH ARGVDYEISR PRSSSFMQGN GPLPKSYGNS 300 SRNCSTSQQD MPSPILPSAR GDSFLLERDS SGLRAEDPYL LSDGVRMSND VHRKGKINDG 360 RLGRGSGQKD LEKLELQRKR NEERMRKEME RYERERRKEE ERLMRERIKE EERLQREQRR 420 EMERRERFLQ RENERAEKNK QKEEIRREKE AIRRKIAVEK ATARRIAKEA MDLIEDEQLE 480 LMDLAASSKG LSSVIQLDHD TLQNLDLYRD SLSTFPPKAL QLKMPFTISP WKDSEENVGN 540 LLMVWRFLIS FSDVLDLWPF TLDEFIQALH DYDSRLLGEI HITLLRSIIR DIEDVARTPY 600 SGIGNNQYTT ANPEGGHPQI VEGAYAWGFD IRSWKKHLNP LTWPEILRQL GLSSGFGPRL 660 KKNNSRVTHT GEKDELQAKG CEDIISTLRS GSAAESAFAS MLEKGLLAPR KSRHRLTPGT 720 VKFAAFHVLS LEGSKGLTVI ELADKIQKSG LRDLRTSKTP EASISVALTR DVKLFERIAP 780 STYCVRAPYV KDPADGEAIL AEARKKIKAF ENGLAGPEDV NDLEKDEDFE CDIDEDPEVD 840 DLATLPSASK SADLGEANGL SGKGGEIMFS DVKANVKSEV EKEVSSPPTS SMKTIVPQCH 900 SEQGKDAAVS CMDNKNAVVE DIKQGKSWVL GLTEGDYCHL SVQERLEALV ALVGIANEGN 960 SIRASLEDRL EAANSLKKQM WAEAQLDNSC MRDVLKFDIQ HSTREIDGFN RDPSQLVDET 1020 KPPLEVVSND VHKLSTERGS VYQEGNISQE NCSSKRSRSQ LKSYISHKAE EVYPYRSLPL 1080 GQDRRHNRYW HFAASASKSD PCSGLIFVEL HDSKWRLIDS AEAFDTLVAS LDMRGVRESH 1140 LRIMLQKIEG AFKENACKKI NLVRNPSLKE DSVSPFSAIL GSSSDSMGVS TSVRVELGRR 1200 NDKEKENLLK RFHSFQRWMW TETYSSVPSC ARKDGKKRCE LLATCEVCVA SYLSEYTHCT 1260 SCHQRLDMAD SSERKIADSG LAVSPLPFGV RLLKALLVFL EASVPDEAYE SFWTEEKRKN 1320 WGFRLNASSS PEELLQVLTY LESAIKKESL SSNFLSAKEL LGAAGATADP GSVDVFPWIP 1380 KTVSAVALRL SDLDASIVYV KPEKPEPVPE DEKEQISLFP GNSLLKGKGP KEQEDQDEVV 1440 PNSGKKSSKR RVIFGSGSNK KAKKKKVLGG NGRFVAGRSN VAVNRNIMSV ELNHQVPGRG 1500 KRTVRKRPER NDEDNYRLVS RMADIVKPTS EEDEEEQTFR GIDQDWAGET PREMDEEWAS 1560 ETPNRVMTPM QVDGESDDNS VGVQSEDDDD EGQFVSYSQR NKWGFDWNSN PNEAMEDVEE 1620 EEVAGVEQVQ REYVAELSES SEDEEDDDLP AASNNAAANN YDRESEDYSS SDS

Sequence ? help Back to Top

Protein Sequence Length: 1673 aa Download sequence Send to blast

MEMGSDGEED QIRSVADSNH KNKKMKKVVD ASNSKDSPSS KPKRQMKTPF QLQTLEQVYA  60
EETYPSEATR AELSEKLDLS DRQLQMWFCH RRLKDKKDGQ VKKTPKPSPV QPASAVPALS  120
LPAAELDSGS DSGSGSGCSP YSDPRREFAS GSSNSPAEYE TMGSAGYEPP RSSVMVRRAV  180
ACIEAQLGEP LRDDGPILGM EFDPLPPGAF GTPIAMQTHQ GHPYESKMYE PHDVRPRRSQ  240
AATSSFHDQQ SLNDPSSFTP DMYGRYSESH ARGVDYEISR PRSSSFMQGN GPLPKSYGNS  300
SRNCSTSQQD MPSPILPSAR GDSFLLERDS SGLRAEDPYL LSDGVRMSND VHRKGKINDG  360
RLGRGSGQKD LEKLELQRKR NEERMRKEME RYERERRKEE ERLMRERIKE EERLQREQRR  420
EMERRERFLQ RENERAEKNK QKEEIRREKE AIRRKIAVEK ATARRIAKEA MDLIEDEQLE  480
LMDLAASSKG LSSVIQLDHD TLQNLDLYRD SLSTFPPKAL QLKMPFTISP WKDSEENVGN  540
LLMVWRFLIS FSDVLDLWPF TLDEFIQALH DYDSRLLGEI HITLLRSIIR DIEDVARTPY  600
SGIGNNQYTT ANPEGGHPQI VEGAYAWGFD IRSWKKHLNP LTWPEILRQL GLSSGFGPRL  660
KKNNSRVTHT GEKDELQAKG CEDIISTLRS GSAAESAFAS MLEKGLLAPR KSRHRLTPGT  720
VKFAAFHVLS LEGSKGLTVI ELADKIQKSG LRDLRTSKTP EASISVALTR DVKLFERIAP  780
STYCVRAPYV KDPADGEAIL AEARKKIKAF ENGLAGPEDV NDLEKDEDFE CDIDEDPEVD  840
DLATLPSASK SADLGEANGL SGKGGEIMFS DVKANVKSEV EKEVSSPPTS SMKTIVPQCH  900
SEQGKDAAVS CMDNKNAVVE DIKQGKSWVL GLTEGDYCHL SVQERLEALV ALVGIANEGN  960
SIRASLEDRL EAANSLKKQM WAEAQLDNSC MRDVLKFDIQ HSTREIDGFN RDPSQLVDET  1020
KPPLEVVSND VHKLSTERGS VYQEGNISQE NCSSKRSRSQ LKSYISHKAE EVYPYRSLPL  1080
GQDRRHNRYW HFAASASKSD PCSGLIFVEL HDSKWRLIDS AEAFDTLVAS LDMRGVRESH  1140
LRIMLQKIEG AFKENACKKI NLVRNPSLKE DSVSPFSAIL GSSSDSMGVS TSVRVELGRR  1200
NDKEKENLLK RFHSFQRWMW TETYSSVPSC ARKDGKKRCE LLATCEVCVA SYLSEYTHCT  1260
SCHQRLDMAD SSERKIADSG LAVSPLPFGV RLLKALLVFL EASVPDEAYE SFWTEEKRKN  1320
WGFRLNASSS PEELLQVLTY LESAIKKESL SSNFLSAKEL LGAAGATADP GSVDVFPWIP  1380
KTVSAVALRL SDLDASIVYV KPEKPEPVPE DEKEQISLFP GNSLLKGKGP KEQEDQDEVV  1440
PNSGKKSSKR RVIFGSGSNK KAKKKKVLGG NGRFVAGRSN VAVNRNIMSV ELNHQVPGRG  1500
KRTVRKRPER NDEDNYRLVS RMADIVKPTS EEDEEEQTFR GIDQDWAGET PREMDEEWAS  1560
ETPNRVMTPM QVDGESDDNS VGVQSEDDDD EGQFVSYSQR NKWGFDWNSN PNEAMEDVEE  1620
EEVAGVEQVQ REYVAELSES SEDEEDDDLP AASNNAAANN YDRESEDYSS SDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	90	97	RRLKDKKD
2	1448	1465	KRRVIFGSGSNKKAKKKK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269\|PubMed:22694359}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013585498.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013585498.1	0.0	PREDICTED: uncharacterized protein LOC106294486 isoform X1
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A0D3CEA5	0.0	A0A0D3CEA5_BRAOL; Uncharacterized protein
STRING	Bo5g055970.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8347	22	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1