PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013585333.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family RAV
Protein Properties Length: 348aa    MW: 39552.5 Da    PI: 7.9963
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013585333.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.62.4e-113986154
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                    ++ykGV +   +g W A+I+       +kr++lg+f +a eAa+a++ a  kl+
  XP_013585333.1 39 TKYKGVVQQQ-NGHWGAQIYAD-----HKRIWLGTFKSAAEAAAAYDSASIKLR 86
                    69****9888.8******9993.....4*********************99997 PP
2B389.52.7e-28171275189
                     EEEE-..-HHHHTT-EE--HHH.HTT................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                     f k+ltpsdv+k++rlv+pkk+a +h                g   +e++++ ++d+  r+W+++++y+k+s+++v+t+GW++Fvk+++Lke+D+
  XP_013585333.1 171 FHKELTPSDVGKLNRLVIPKKHAVKHlpfisddqnereegetG-GAAEDVEVGFYDRAMRQWKFRYCYWKSSQSFVFTRGWNGFVKEKNLKEKDV 264
                     89*****************************998877766642.33599********************************************** PP

                     EEEEE-SS.SE CS
              B3  80 vvFkldgr.se 89 
                     +vF+  +  s+
  XP_013585333.1 265 IVFYTCDVpSN 275
                     ****6554444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.44E-123999No hitNo description
SuperFamilySSF541713.92E-144099IPR016177DNA-binding domain
PROSITE profilePS5103217.2274097IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-164097IPR001471AP2/ERF domain
SMARTSM003803.7E-1640103IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.7E-31166269IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.37E-27169270IPR015300DNA-binding pseudobarrel domain
CDDcd100178.58E-25170277No hitNo description
PfamPF023621.1E-25171276IPR003340B3 DNA binding domain
SMARTSM010191.2E-19171282IPR003340B3 DNA binding domain
PROSITE profilePS5086311.547171284IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDSLKETSHE ANTTTDTSVS SDLRLAKRMK PTVSPTATTK YKGVVQQQNG HWGAQIYADH  60
KRIWLGTFKS AAEAAAAYDS ASIKLRSFDA NSHRNFPWSE ITVQEPDFQK SHTTEAVLNM  120
IRDSSYPQKF GDYLIVRSQM VAIANVNIVG SKQSRGGGEE STKCFSCTEL FHKELTPSDV  180
GKLNRLVIPK KHAVKHLPFI SDDQNEREEG ETGGAAEDVE VGFYDRAMRQ WKFRYCYWKS  240
SQSFVFTRGW NGFVKEKNLK EKDVIVFYTC DVPSNFKTLE GQSNKFLMID VDYFTDKASV  300
EPKEVNKMVH NVSEREMKTE NFFGTKVEEE TKSEVSKGGF MLFGVRIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-2617026713100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013585333.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013585333.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6880.0RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A0D3CG530.0A0A0D3CG53_BRAOL; Uncharacterized protein
STRINGBo5g081270.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-163RAV family protein