PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013585325.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | STAT | ||||||||
Protein Properties | Length: 676aa MW: 76147.9 Da PI: 4.7039 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 177.2 | 2.4e-55 | 224 | 334 | 1 | 111 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkky 95 ldvvl+na+gqpv+kdv+vvasLlya+sg++vek++d eapLL+sydGvefs+ed+p+ ll+G+as+klkisq skcd+rLf+ikfeip+ +y XP_013585325.1 224 LDVVLSNAIGQPVRKDVQVVASLLYANSGTPVEKTSDLEAPLLVSYDGVEFSAEDKPCTLLNGCASLKLKISQHYSKCDKRLFCIKFEIPNNGSY 318 8********************************************************************************************** PP STAT 96 pfleavskpirCisrs 111 pflea+++++rCisr+ XP_013585325.1 319 PFLEAFTNQMRCISRT 334 **************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.60.120.200 | 1.5E-5 | 25 | 149 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
Pfam | PF13385 | 9.2E-8 | 27 | 172 | No hit | No description |
SuperFamily | SSF49899 | 1.9E-8 | 29 | 166 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
CDD | cd10338 | 5.71E-66 | 571 | 676 | No hit | No description |
Gene3D | G3DSA:3.30.505.10 | 9.6E-8 | 579 | 629 | IPR000980 | SH2 domain |
SuperFamily | SSF55550 | 1.51E-11 | 579 | 667 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 10.048 | 582 | 635 | IPR000980 | SH2 domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 676 aa Download sequence Send to blast |
MADGCALDTE KYSLLEDFNV DVEVEKQEFE TFSLCFWVYL LDSTTYPSTI IRQVHSDMSF 60 SAPFLVLDEN KKMILLPLTL LHKEAPDPVN TASWTEVPNV STTAEFPLQR WVHVGCEVSR 120 NYMRLYICGK KVGEKVLTSV MTNGTNSDNV RRVSLFSVGG DGYSVQGFIH CAQVLPSTVH 180 VNNHYTKDPP LWLSVEKPST CEVDEDGVWS IVGEKASCGM IFSLDVVLSN AIGQPVRKDV 240 QVVASLLYAN SGTPVEKTSD LEAPLLVSYD GVEFSAEDKP CTLLNGCASL KLKISQHYSK 300 CDKRLFCIKF EIPNNGSYPF LEAFTNQMRC ISRTGGDSVT PKRLSPLVEG VPSRNGASDS 360 SLSMKRIKLG EEKIPESEFE GGNGTSMEWG PQNQDEEEEE EEEEEEDQSS TDSDNTEVRG 420 SMGSRRYTIS DSTIFKYCLG NLTERSLIMK EITNNAGDEE VSEFADQVSL YSGCSHHGYQ 480 IKMARKLIAE GTNAWILISR NYQNVHWDNV VIEIEEHFMR IANCSSRSLT HQDFELLRRI 540 CGCYDYITQE NFEKMWCWLF PVATSISRGL INGMWRSCSP KWIEGFVTKE EAEHSLQSQE 600 PGTFILRFPT SRSWPHPDAG SLVVTYVGRD FVIRHRLLAV DHICDSSERY TDAKPLQDML 660 LAEPELSRLG RIVRSI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 361 | 368 | LSMKRIKL |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:15073273}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013585325.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT046180 | 0.0 | BT046180.1 Arabidopsis thaliana unknown protein (At1g17040) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013585324.1 | 0.0 | PREDICTED: uncharacterized protein LOC106294314 | ||||
Refseq | XP_013585325.1 | 0.0 | PREDICTED: uncharacterized protein LOC106294314 | ||||
Swissprot | B5X561 | 0.0 | SHA_ARATH; SH2 domain-containing protein A | ||||
TrEMBL | A0A0D3CAX3 | 0.0 | A0A0D3CAX3_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g022370.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17040.1 | 0.0 | SH2 domain protein A |
Publications ? help Back to Top | |||
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