PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013585322.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 429aa MW: 49128.6 Da PI: 7.3983

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013585322.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	120.1	2.7e-37	150	311	2	133
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssasec 73 + ++drhski T++g RdRR+Rls+++a+++F Lqd+LGfdk+skt+eWLl+qakp+i++++++ s++++s+ XP_013585322.1 150 PSRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIANSlsnqfkhggfssgddsqtrpalgSTETSSDL 244 5799**********************************************************9999999988887777666666633333232 PP TCP 74 ....eaesssssasnsssg.................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 + + ++ k+k s +++ +++k+ rakar+ra++rt ek +++ XP_013585322.1 245 cefaS-------------VwtvedrcsntsmtenkvDGRTMRGKRKMS-QRTPILKEMSKDARAKARERAKDRTMEKIMKR 311 23231.............022222222233344433233333333333.33334678889***************8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.7E-40	151	310	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.724	152	210	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	9.467	290	307	IPR017888	CYC/TB1, R domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000032	Biological Process	regulation of secondary shoot formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MNNNKTFSTT STINEDYMSF PYNDNYCSQP LLPFSPSSTI NDLLIHSNSN ISNNHLDHHH 60 QFLQAASPFS QFEFVQDFSL LPSFLPQNII HNDNQTISTN DHHHPSLLPL NNTIDESQLI 120 EPSETITTHN EDSQRISTTQ DPKMKNAKKP SRTDRHSKIK TAKGTRDRRM RLSLDVAKEL 180 FGLQDMLGFD KASKTVEWLL TQAKPEIIKI ANSLSNQFKH GGFSSGDDSQ TRPALGSTET 240 SSDLCEFASV WTVEDRCSNT SMTENKVDGR TMRGKRKMSQ RTPILKEMSK DARAKARERA 300 KDRTMEKIMK RRPQVNAVEE VEAHNQHDEV VKNNNSGVNW TTSFEVTPSG KNMEELCKNN 360 RFAVYNDIVV NKKDHISEES YNMISQLNSS FPMLTHHRSQ GAATSMEQQQ QQQHQVRDVH 420 HFLYNYHNM

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MNNNKTFSTT STINEDYMSF PYNDNYCSQP LLPFSPSSTI NDLLIHSNSN ISNNHLDHHH  60
QFLQAASPFS QFEFVQDFSL LPSFLPQNII HNDNQTISTN DHHHPSLLPL NNTIDESQLI  120
EPSETITTHN EDSQRISTTQ DPKMKNAKKP SRTDRHSKIK TAKGTRDRRM RLSLDVAKEL  180
FGLQDMLGFD KASKTVEWLL TQAKPEIIKI ANSLSNQFKH GGFSSGDDSQ TRPALGSTET  240
SSDLCEFASV WTVEDRCSNT SMTENKVDGR TMRGKRKMSQ RTPILKEMSK DARAKARERA  300
KDRTMEKIMK RRPQVNAVEE VEAHNQHDEV VKNNNSGVNW TTSFEVTPSG KNMEELCKNN  360
RFAVYNDIVV NKKDHISEES YNMISQLNSS FPMLTHHRSQ GAATSMEQQQ QQQHQVRDVH  420
HFLYNYHNM

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Detected in axillary mersitems which appears in the axils of leaves after flowering. During bud vegetative development, down-regulated in the outer layers of the meristem, but accumulates transiently in young leaf primordia. In buds bearing flowers, restricted to the provascular tissue underlying the bud. Accumulates in axillary buds, but disappears at the time of bud outgrowth. {ECO:0000269\|PubMed:17307924}.
Uniprot	TISSUE SPECIFICITY: Expressed in unelongated axillary buds, and, to a lower extent, in axillary structures such as flowers and siliques. {ECO:0000269\|PubMed:17307924, ECO:0000269\|PubMed:17452340}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269\|PubMed:17307924, ECO:0000269\|PubMed:17452340}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013585322.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269\|PubMed:17307924}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013585322.1	0.0	PREDICTED: transcription factor TCP18-like isoform X2
Swissprot	A1YKT1	0.0	TCP18_ARATH; Transcription factor TCP18
TrEMBL	A0A0D3ACJ7	0.0	A0A0D3ACJ7_BRAOL; Uncharacterized protein
STRING	Bo1g117490.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18550.1	1e-163	TCP family protein

Publications ? help Back to Top
Lewis JM, et al. Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development. Plant Cell Rep., 2008. 27(7): p. 1217-25 [PMID:18392625] Niwa M,Endo M,Araki T Florigen is involved in axillary bud development at multiple stages in Arabidopsis. Plant Signal Behav, 2013. 8(11): p. e27167 [PMID:24305631] González-Grandío E,Cubas P Identification of gene functions associated to active and dormant buds in Arabidopsis. Plant Signal Behav, 2014. 9(2): p. e27994 [PMID:24518068] Stes E, et al. Strigolactones as an auxiliary hormonal defence mechanism against leafy gall syndrome in Arabidopsis thaliana. J. Exp. Bot., 2015. 66(16): p. 5123-34 [PMID:26136271] Yao C,Finlayson SA Abscisic Acid Is a General Negative Regulator of Arabidopsis Axillary Bud Growth. Plant Physiol., 2015. 169(1): p. 611-26 [PMID:26149576] González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241] Seale M,Bennett T,Leyser O BRC1 expression regulates bud activation potential but is not necessary or sufficient for bud growth inhibition in Arabidopsis. Development, 2017. 144(9): p. 1661-1673 [PMID:28289131] Otori K,Tamoi M,Tanabe N,Shigeoka S Enhancements in sucrose biosynthesis capacity affect shoot branching in Arabidopsis. Biosci. Biotechnol. Biochem., 2017. 81(8): p. 1470-1477 [PMID:28471323] Lantzouni O,Klermund C,Schwechheimer C Largely additive effects of gibberellin and strigolactone on gene expression in Arabidopsis thaliana seedlings. Plant J., 2017. 92(5): p. 924-938 [PMID:28977719] Yang Y, et al. The TIE1 transcriptional repressor controls shoot branching by directly repressing BRANCHED1 in Arabidopsis. PLoS Genet., 2018. 14(3): p. e1007296 [PMID:29570704]