PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013585320.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 359aa    MW: 40524.7 Da    PI: 6.7404
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013585320.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.4e-05199218120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  n++ H+
  XP_013585320.1 199 FSCPLCYKTFNRYNNMQMHM 218
                     89*****************9 PP
2zf-C2H212.90.00032283305123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C  Cgk F  k + ++H +++
  XP_013585320.1 283 FACRRCGKAFAVKGDWRTHEKNC 305
                     78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.21E-5194222No hitNo description
Gene3DG3DSA:3.30.160.603.7E-5199218IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.201199226IPR007087Zinc finger, C2H2
PROSITE patternPS000280201221IPR007087Zinc finger, C2H2
SuperFamilySSF576673.24E-6269303No hitNo description
Gene3DG3DSA:3.30.160.609.0E-6270303IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767283303IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MSDPACIFNN GIVDGYDYSF NYSTSLSHIY NSNGSFYYPH NTTDINPNST LPESPPLREA  60
LPLLSLSPIH KQQEDIVPQH EYCFMETTEN SSNSNFLNHN LDQCQESTHH YDVTVDLHLG  120
LPNPGGDAIG YGGGGSSSSD VILDSTDQEH HQDRHQYHGV EVTLASDHHH DGHGGVQRGS  180
HNHYWIPTPS QILMGPTQFS CPLCYKTFNR YNNMQMHMWG HGSEYRKGPE SLRGTQPTGM  240
LKLPCYCCAP GCKNNIEHPR ARPLKDFRTL QTHYKRKHGA RPFACRRCGK AFAVKGDWRT  300
HEKNCGRLWY CSCGSDFKHK RSLKDHVKAF GNGHVPCFGI DCFGDHEDEE AASDVEQQE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013585320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118110.0AJ311811.2 Arabidopsis thaliana mRNA for WIP4 protein (At3g20880 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013585320.10.0PREDICTED: zinc finger protein WIP4
SwissprotQ8W0300.0ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBLA0A0D3CHV80.0A0A0D3CHV8_BRAOL; Uncharacterized protein
STRINGBo5g105140.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20880.10.0WIP domain protein 4
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]