PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013585192.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 177aa MW: 20499.1 Da PI: 7.8935 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 33.4 | 1e-10 | 1 | 23 | 33 | 55 |
G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55 +++m vkgLtl+h+kSHLQk+Rl XP_013585192.1 1 MRVMAVKGLTLYHLKSHLQKFRL 23 789*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-9 | 1 | 24 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 1.7E-14 | 79 | 119 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MRVMAVKGLT LYHLKSHLQK FRLGKQPHNE HSHGHSTNIR DTNRVVNRHR SITHAASMLD 60 LQRNVVFSTP HIIGRNMNEM QMEVKRRIEE EVEVERQVNQ RIEAQGKYME SMLEKACETQ 120 EASLTKDYST LFFNNTSPLP IPWFEDHFPS SSSMDSTLNL SDISLNFSLQ DSRSSIS |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013585192.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189335 | 1e-160 | AC189335.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039A19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013585192.1 | 1e-130 | PREDICTED: myb family transcription factor APL isoform X3 | ||||
Swissprot | Q8VYI2 | 9e-97 | PHLC_ARATH; Myb family transcription factor PHL12 | ||||
TrEMBL | A0A078HZI9 | 1e-128 | A0A078HZI9_BRANA; BnaC05g40460D protein | ||||
TrEMBL | A0A0D3CKT2 | 1e-128 | A0A0D3CKT2_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FWD0 | 1e-128 | A0A3P6FWD0_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g133200.1 | 1e-129 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12730.1 | 8e-74 | G2-like family protein |
Publications ? help Back to Top | |||
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