PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013585191.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 220aa    MW: 25270.6 Da    PI: 7.0804
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013585191.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.19.9e-342377155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    kprl+Wt eLHerFv+av++LGG++kAtPkti+++m vkgLtl+h+kSHLQk+Rl
  XP_013585191.1 23 KPRLCWTAELHERFVDAVTHLGGPDKATPKTIMRVMAVKGLTLYHLKSHLQKFRL 77
                    79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.8032080IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-312078IPR009057Homeodomain-like
SuperFamilySSF466891.08E-162278IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-242378IPR006447Myb domain, plants
PfamPF002492.1E-62675IPR001005SANT/Myb domain
PfamPF143792.5E-14122162IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MMQSREERRA ESPSGLVLTT DPKPRLCWTA ELHERFVDAV THLGGPDKAT PKTIMRVMAV  60
KGLTLYHLKS HLQKFRLGKQ PHNEHSHGHS TNIRDTNRAS MLDLQRNVVF STPHIIGRNM  120
NEMQMEVKRR IEEEVEVERQ VNQRIEAQGK YMESMLEKAC ETQEASLTKD YSTLFFNNTS  180
PLPIPWFEDH FPSSSSMDST LNLSDISLNF SLQDSRSSIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-182379258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-182379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-182379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-182379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-182379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-182379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-182379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-182379258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013585191.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0707641e-167AY070764.1 Arabidopsis thaliana AT3g12730/MBK21_9 mRNA, complete cds.
GenBankAY1439161e-167AY143916.1 Arabidopsis thaliana At3g12730/MBK21_9 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013585191.11e-165PREDICTED: myb family transcription factor APL isoform X2
SwissprotQ8VYI21e-137PHLC_ARATH; Myb family transcription factor PHL12
TrEMBLA0A397ZHR31e-159A0A397ZHR3_BRACM; Uncharacterized protein
STRINGBo5g133200.11e-155(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12730.11e-114G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]