PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013585190.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 231aa MW: 26542 Da PI: 7.8369

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013585190.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.9	1.1e-33	23	77	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt eLHerFv+av++LGG++kAtPkti+++m vkgLtl+h+kSHLQk+Rl XP_013585190.1 23 KPRLCWTAELHERFVDAVTHLGGPDKATPKTIMRVMAVKGLTLYHLKSHLQKFRL 77 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.803	20	80	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-31	20	78	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.18E-16	22	78	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-24	23	78	IPR006447	Myb domain, plants
Pfam	PF00249	2.3E-6	26	75	IPR001005	SANT/Myb domain
Pfam	PF14379	2.6E-14	133	173	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MMQSREERRA ESPSGLVLTT DPKPRLCWTA ELHERFVDAV THLGGPDKAT PKTIMRVMAV 60 KGLTLYHLKS HLQKFRLGKQ PHNEHSHGHS TNIRDTNRVV NRHRSITHAA SMLDLQRNVV 120 FSTPHIIGRN MNEMQMEVKR RIEEEVEVER QVNQRIEAQG KYMESMLEKA CETQEASLTK 180 DYSTLFFNNT SPLPIPWFED HFPSSSSMDS TLNLSDISLN FSLQDSRSSI S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-17	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-17	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-17	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-17	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-17	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-17	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-17	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-17	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269\|PubMed:15923329}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013585190.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189335	1e-160	AC189335.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039A19, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013585190.1	1e-174	PREDICTED: myb family transcription factor APL isoform X1
Swissprot	Q8VYI2	1e-133	PHLC_ARATH; Myb family transcription factor PHL12
TrEMBL	A0A078HZI9	1e-172	A0A078HZI9_BRANA; BnaC05g40460D protein
TrEMBL	A0A0D3CKT2	1e-172	A0A0D3CKT2_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6FWD0	1e-172	A0A3P6FWD0_BRAOL; Uncharacterized protein
STRING	Bo5g133200.1	1e-173	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13745	17	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12730.1	1e-110	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]