PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013585077.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 345aa MW: 39365.9 Da PI: 7.871 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50.4 | 2.9e-16 | 10 | 50 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 en+ r +t+ kRr g+ KK +E+S+LCd+++++i+fs++ XP_013585077.1 10 MENEKSRAITLKKRRSGLVKKVKEISTLCDVKACLIMFSPK 50 5999***********************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.554 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.6E-20 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.94E-25 | 1 | 84 | No hit | No description |
PRINTS | PR00404 | 3.7E-9 | 2 | 22 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-20 | 3 | 93 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-16 | 10 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-9 | 22 | 37 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-9 | 37 | 58 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 345 aa Download sequence Send to blast |
MTKKVKLALM ENEKSRAITL KKRRSGLVKK VKEISTLCDV KACLIMFSPK EVEPMVWPSA 60 EAARNLLKDF DALPAFTKKK NETSLESYLK EKTWKVHENL RKKTQKENEE CMMDQLKVQL 120 SSFPKLDDLD VKEIYSLISF SKDAIMHLRK KVGSVQHCPL RDPPVYPFED QVKEFRTTTG 180 GSQENERARK TYEEVNMASI GASKEKQTYY LMDKWIFPSL KQPSPQSHQQ IMMNMASYNN 240 STLDPRCYQS YHPYQGSSSN GDHNLEMAPA FPPILACPDF VGPVSHPYPF DFISHEERSN 300 AINNVFFPET LAPGNGTTAE EGNVGASSFD PSYIMDYPGI NNHHF |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013585077.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP011622 | 0.0 | AP011622.1 Brassica rapa subsp. pekinensis DNA, chromosome: Linkage group A5, BAC clone: KBrB038I07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013585077.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL17 | ||||
Refseq | XP_022558866.1 | 0.0 | agamous-like MADS-box protein AGL17 | ||||
TrEMBL | A0A0D3CL25 | 0.0 | A0A0D3CL25_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6F416 | 0.0 | A0A3P6F416_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g135120.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4724 | 14 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40210.1 | 5e-82 | AGAMOUS-like 48 |