PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013585073.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 308aa    MW: 35918.6 Da    PI: 10.2951
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013585073.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.12.2e-2016108197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffk++ ++d +++++  lp +f+ ++ +k+  s +++++ e+g sWev +  +k+++  y+ ++GW++Fv++n L +++f++F+++g+++f  +v
  XP_013585073.1  16 FFKIFQSADLSSECMRALPYNFM-QNLSKEDFSYKMVIRAERGSSWEVDI--SKNPRFyYMEKSGWNQFVSDNALGDNEFITFTHKGSMSF--NV 105
                     99*********************.66567789******************..******566669*********************999999..66 PP

                     EEE CS
              B3  95 kvf 97 
                      ++
  XP_013585073.1 106 NIY 108
                     665 PP
2B337.93.2e-122192981395
                     TT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3  13 sgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ++ + lp+ f eeh   + es++ t+ + e   sW+v +    + +r+v+++GW++ +++  Lk+gD ++Fkl++ +ef l  k
  XP_013585073.1 219 LKFMLLPRVFEEEHI--PGESMEYTIHHsEMRCSWNVLC--LVRENRTVFSSGWSRLAREFPLKVGDRCTFKLIKPTEFVLITK 298
                     456899999999983..5678899999845559******..888888**************************99888855544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.4E-1910112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-1911115IPR015300DNA-binding pseudobarrel domain
CDDcd100172.21E-1615108No hitNo description
SMARTSM010194.2E-2416111IPR003340B3 DNA binding domain
PROSITE profilePS5086313.73316111IPR003340B3 DNA binding domain
PfamPF023621.8E-1816108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-14205296IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-17205296IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.8207301IPR003340B3 DNA binding domain
CDDcd100175.01E-10208291No hitNo description
SMARTSM010197.8E-12210300IPR003340B3 DNA binding domain
PfamPF023628.6E-11218299IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MSWNGRIKEE RKNLSFFKIF QSADLSSECM RALPYNFMQN LSKEDFSYKM VIRAERGSSW  60
EVDISKNPRF YYMEKSGWNQ FVSDNALGDN EFITFTHKGS MSFNVNIYGK NGKEIVAPRK  120
PPTTTPLSGV KKEEGERSYK DVKKEEERCE SMEGVELEEA TKKKKKSKKV LSYVEVGESS  180
RGSRKKKAEK LKTLKKKKKI KTVKKGVPEF EITIRKSYLK FMLLPRVFEE EHIPGESMEY  240
TIHHSEMRCS WNVLCLVREN RTVFSSGWSR LAREFPLKVG DRCTFKLIKP TEFVLITKKS  300
RKETTVIG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184198KKKAEKLKTLKKKKK
2194204KKKKKIKTVKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013585073.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893481e-140AC189348.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB042O03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013585073.10.0PREDICTED: B3 domain-containing protein At3g17010-like
SwissprotQ9LSP61e-113Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLA0A3N6PV110.0A0A3N6PV11_BRACR; Uncharacterized protein
STRINGBo5g123540.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.11e-111B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]