PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013585030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 266aa MW: 29230.3 Da PI: 6.5803 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 51 | 2.5e-16 | 31 | 91 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p +ee ++ k l ++ +++V++WFqNrR + ++ XP_013585030.1 31 RSRWSPKPEQILILESIFNSgMVNPPKEETVRIRKMLekfgKVGDANVFYWFQNRRSRSRR 91 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 108.4 | 4.3e-35 | 30 | 93 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+P+peQi iLe++++sG+++P+kee+ ri+++Le++Gk++d+NVfyWFQNr++R+r++q XP_013585030.1 30 VRSRWSPKPEQILILESIFNSGMVNPPKEETVRIRKMLEKFGKVGDANVFYWFQNRRSRSRRRQ 93 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.15E-14 | 23 | 98 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-9 | 25 | 98 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.726 | 27 | 92 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.4E-6 | 29 | 96 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.5E-14 | 31 | 91 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 266 aa Download sequence Send to blast |
MDQEQTPHSA TGHSHSPSSS ASGTTSTEQV RSRWSPKPEQ ILILESIFNS GMVNPPKEET 60 VRIRKMLEKF GKVGDANVFY WFQNRRSRSR RRQRQLQAAA AAATTTTNTC DQTMMVSNNL 120 PQHSGSDLGF GGCSTSNYLF ASSSSYGVGC DNHSNNGMEN LLTMSGEMGY HEANQHHYNY 180 HSSNVESILC PSEQSSNYHY QQGSITVFIN GVPTEVTSGG IDMKATFGED LVLVNSSGVP 240 LPTDQFGFLM LSLQHGEAYF LVPRPT |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013585030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY251402 | 0.0 | AY251402.1 Arabidopsis thaliana WOX11 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013585030.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 11-like | ||||
Swissprot | Q6X7J3 | 1e-150 | WOX11_ARATH; WUSCHEL-related homeobox 11 | ||||
TrEMBL | A0A0D3CMZ8 | 0.0 | A0A0D3CMZ8_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g148780.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2819 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G03660.1 | 1e-131 | WUSCHEL related homeobox 11 |
Publications ? help Back to Top | |||
---|---|---|---|
|