PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013584952.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 133aa MW: 14709 Da PI: 8.8007 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.5 | 8.9e-20 | 17 | 67 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+++AeIrd ++ g r++lg+f+tae+Aa+a+++a+ +++g XP_013584952.1 17 KFRGVRRRP-WGKYAAEIRDSRKHG--ERVWLGTFDTAEDAARAYDRAAYSMRG 67 79*******.**********65443..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.525 | 17 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-23 | 17 | 77 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.9E-35 | 17 | 81 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.16E-17 | 17 | 76 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.0E-31 | 17 | 77 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.6E-14 | 17 | 67 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-11 | 18 | 29 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-11 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MDQGGRSGGG GGAEQGKFRG VRRRPWGKYA AEIRDSRKHG ERVWLGTFDT AEDAARAYDR 60 AAYSMRGKAA ILNFPHEYNM GSGSSSNSAA TAANPSSSRQ VFEFEYLDDS VLEELLEYGE 120 NYNKNNVNMG KRQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-54 | 1 | 111 | 1 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 11 | GGRSGGGGG |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitously expressed after ethylene treatment. {ECO:0000269|PubMed:11950980}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013584952.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains). Not affected by methyl jasmonate (MeJA), ethylene or salicylic acid (SA). {ECO:0000269|PubMed:11950980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232437 | 1e-134 | AC232437.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002B23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013584952.1 | 6e-94 | PREDICTED: ethylene-responsive transcription factor 14 | ||||
Refseq | XP_013695096.1 | 6e-94 | ethylene-responsive transcription factor 14 | ||||
Swissprot | P93822 | 9e-58 | ERF97_ARATH; Ethylene-responsive transcription factor 14 | ||||
TrEMBL | A0A078FUV4 | 1e-92 | A0A078FUV4_BRANA; BnaC05g02480D protein | ||||
TrEMBL | A0A0D3C7I3 | 1e-92 | A0A0D3C7I3_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6ENE9 | 1e-92 | A0A3P6ENE9_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g004520.1 | 2e-93 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04370.1 | 4e-37 | Ethylene-responsive element binding factor 14 |