PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013584821.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 273aa MW: 30935.6 Da PI: 8.7035 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 108.2 | 4.1e-34 | 133 | 190 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk++ers++dp++v++tYeg+Hnh+ XP_013584821.1 133 EDGYRWRKYGQKAVKDSPYPRSYYRCTTQKCNVKKRLERSSQDPSIVITTYEGKHNHP 190 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.3E-35 | 117 | 192 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-29 | 124 | 192 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.96 | 127 | 192 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-38 | 132 | 191 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.3E-26 | 133 | 190 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MADHKNTSFE EKSFTSLTNC LKSSLVMDYN SLEKVFNNSS PFQPISPSSM GQIANYPYLN 60 LNPYSPIVSS SSNEADPKES LGDKISMEDH DGDQRGVGES SKQLTKQGKG KGEKKEREAR 120 VAFMTKSDID HLEDGYRWRK YGQKAVKDSP YPRSYYRCTT QKCNVKKRLE RSSQDPSIVI 180 TTYEGKHNHP IPSGLRGPVI AEHLLGNREN GLLHSFPRHH REFLMMNHSP VNYQSVGSVP 240 YEHSRPNSSN LREVVDYGLL QDIVPSMLLK HES |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-29 | 122 | 193 | 7 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-29 | 122 | 193 | 7 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013584821.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013584821.1 | 0.0 | PREDICTED: probable WRKY transcription factor 71 isoform X2 | ||||
Refseq | XP_022559508.1 | 0.0 | probable WRKY transcription factor 71 | ||||
Swissprot | Q93WV4 | 1e-122 | WRK71_ARATH; WRKY transcription factor 71 | ||||
TrEMBL | A0A0D3CEL7 | 0.0 | A0A0D3CEL7_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g061050.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 1e-122 | WRKY DNA-binding protein 71 |
Publications ? help Back to Top | |||
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