PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013584820.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 276aa MW: 31356.1 Da PI: 8.9456

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013584820.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	108.1	4.2e-34	136	193	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk++ers++dp++v++tYeg+Hnh+ XP_013584820.1 136 EDGYRWRKYGQKAVKDSPYPRSYYRCTTQKCNVKKRLERSSQDPSIVITTYEGKHNHP 193 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.4E-35	120	195	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-29	127	195	IPR003657	WRKY domain
PROSITE profile	PS50811	32.96	130	195	IPR003657	WRKY domain
SMART	SM00774	1.4E-38	135	194	IPR003657	WRKY domain
Pfam	PF03106	4.4E-26	136	193	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MADHKNTSFE EKSFTSLTNC LKSSLVMDYN SLEKVFNNSS PFQPISPSSM GQIANYPYLN 60 LNPYSPIVSS SSNEADPKES LGDKISMEDH DGDQRGVGES SKQFMVRTKQ GKGKGEKKER 120 EARVAFMTKS DIDHLEDGYR WRKYGQKAVK DSPYPRSYYR CTTQKCNVKK RLERSSQDPS 180 IVITTYEGKH NHPIPSGLRG PVIAEHLLGN RENGLLHSFP RHHREFLMMN HSPVNYQSVG 240 SVPYEHSRPN SSNLREVVDY GLLQDIVPSM LLKHES

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-29	125	196	7	78	Probable WRKY transcription factor 4
2lex_A	1e-29	125	196	7	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013584820.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013584820.1	0.0	PREDICTED: probable WRKY transcription factor 71 isoform X1
Swissprot	Q93WV4	1e-119	WRK71_ARATH; WRKY transcription factor 71
TrEMBL	A0A0D3CEL7	0.0	A0A0D3CEL7_BRAOL; Uncharacterized protein
STRING	Bo5g061050.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13911	18	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	1e-119	WRKY DNA-binding protein 71

Publications ? help Back to Top
Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700] Yu Y, et al. WRKY71 accelerates flowering via the direct activation of FLOWERING LOCUS T and LEAFY in Arabidopsis thaliana. Plant J., 2016. 85(1): p. 96-106 [PMID:26643131] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Yu Y, et al. WRKY71 Acts Antagonistically Against Salt-Delayed Flowering in Arabidopsis thaliana. Plant Cell Physiol., 2018. 59(2): p. 414-422 [PMID:29272465]