PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013584811.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 198aa    MW: 23065.3 Da    PI: 5.6686
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013584811.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.41.6e-1388138555
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                     +++rr+++NRe+ArrsR RK+  ++eL   v  L + N+ L+++l++ ++ 
  XP_013584811.1  88 RKQRRMISNRESARRSRMRKQRHLDELWSHVIRLRTDNHCLIDKLNRVSES 138
                     79*******************************************998875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.3E-1384148IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.89886138IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.9E-1186137No hitNo description
PfamPF001702.0E-1188139IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.69E-1188138No hitNo description
CDDcd147023.71E-1889140No hitNo description
PROSITE patternPS00036091106IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MNTIPAELTG YFQYVSPEIY NNQTPITESE YFKMPSSPTS ASSFYYINGL MTNNNNNYSS  60
SSNVQDPVTS NNSTSDDDHQ QSMVIDERKQ RRMISNRESA RRSRMRKQRH LDELWSHVIR  120
LRTDNHCLID KLNRVSESHQ LALKENAKLK EETSNLKQLI SEIKSNNEDD NNFLRELEDS  180
ISNSRSDLNQ MGRDFELC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100107RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013584811.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0271340.0AC027134.4 Arabidopsis thaliana chromosome I BAC F13B4 genomic sequence, complete sequence.
GenBankAF3324300.0AF332430.1 Arabidopsis thaliana clone C00105 (e) putative bZIP transcription factor (At1g13600) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF21F230.0AC027656.4 Sequence of BAC F21F23 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584811.11e-144PREDICTED: basic leucine zipper 43-like
SwissprotQ9FMC21e-31BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A0D3C9U41e-143A0A0D3C9U4_BRAOL; Uncharacterized protein
STRINGBo5g017580.11e-144(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28922469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13600.11e-116basic leucine-zipper 58
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]