PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013584744.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 371aa MW: 43068.1 Da PI: 6.0229 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.3 | 2.2e-51 | 23 | 151 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPt+eel+++yL+kkv+++k++l +vi+evd++k+ePwd+++ ++ + +++wyfFs++dkky+tg+r+nrat sg+Wkatg+dk + XP_013584744.1 23 VPPGFRFHPTEEELLHYYLRKKVHSQKIDL-DVIREVDLNKLEPWDIQEecRIGStPQNDWYFFSHKDKKYPTGTRTNRATVSGFWKATGRDKII 116 69****************************.9***************963433332456************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s + +gl+ktLvfykgrap+g+k+dW+mheyrl XP_013584744.1 117 YS-CVRRIGLRKTLVFYKGRAPHGQKSDWIMHEYRL 151 *9.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-56 | 19 | 184 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.534 | 23 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-27 | 24 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009809 | Biological Process | lignin biosynthetic process | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MISLPSSMAE NKVNLSINGQ SKVPPGFRFH PTEEELLHYY LRKKVHSQKI DLDVIREVDL 60 NKLEPWDIQE ECRIGSTPQN DWYFFSHKDK KYPTGTRTNR ATVSGFWKAT GRDKIIYSCV 120 RRIGLRKTLV FYKGRAPHGQ KSDWIMHEYR LDETPTTNEY SDVVSEDPMS YNEEGWVVCR 180 VFRKKNYQKI DDSPKITLSS SPGDTEEKKR STTSHNTQNG NVLDHVLLYM DRCCPNICMP 240 ELQTTIQRQH NQDDILFMQL PSLETPRSED LVDQSLNIPN QLDSSLVQEK KNGRPVCSNW 300 ASLDRLVAWQ LNNGHHKCDR ASFDEEEEDG DTMMQRWDLH WSNDDHVDLW SSFTESSSSP 360 SSLDPLLHLS V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-48 | 23 | 186 | 15 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Stems and roots, specifically in interfascicular fibers (sclerenchyma), cells differentiating into vascular vessels (cambium), and xylem. {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:17114348, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17565617}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening and lignification of sclerenchymatous fibers and secondary xylem vessels (tracheary elements). Seems to repress the secondary cell wall thickening of xylary fibers. May also regulate the secondary cell wall lignification of other tissues. Binds to and activates the promoter of MYB46. {ECO:0000269|PubMed:17114348, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:17890373}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00016 | PBM | Transfer from AT1G32770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013584744.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF974755 | 0.0 | KF974755.1 Brassica napus NAC transcription factor 12-1 (NAC12-1.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013584744.1 | 0.0 | PREDICTED: NAC domain-containing protein 12 | ||||
Swissprot | Q9LPI7 | 0.0 | NAC12_ARATH; NAC domain-containing protein 12 | ||||
TrEMBL | A0A0D3CDT9 | 0.0 | A0A0D3CDT9_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g049360.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM778 | 28 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32770.1 | 0.0 | NAC domain containing protein 12 |