PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013584743.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 317aa    MW: 35166.8 Da    PI: 4.6306
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013584743.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.48.6e-18206240135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  XP_013584743.1 206 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 240
                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169929.9E-1001296IPR016679Transcription factor, GATA, plant
SMARTSM004011.3E-17200250IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.358200236IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-15203264No hitNo description
Gene3DG3DSA:3.30.50.102.4E-14204238IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.81E-15205252No hitNo description
PROSITE patternPS003440206231IPR000679Zinc finger, GATA-type
PfamPF003201.1E-15206240IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEQQQQQLTP ELFPVAGNAD SFVVDDLLDF SNENGQPDDG LEPFPDSSTV STGTLADSSN  60
SSSSFYTDGS VFSDDLCVPS EDLAELEWLS NLVEESFSKE DQDKLQLLSG LQKPQTTRLT  120
QTKQEPEPEP ELDQIFIPTD TDDSNVSVPA KARSKRPRSA ASTWASRLLA IAGSDESGPK  180
KKQLRAKEHE GSAGELEGEA GGERRCLHCA TDKTPQWRTG PMGPKTLCNA CGVRYKSGRL  240
VPEYRPASSP TFVMTRHSNS HRKVMELRRQ KEMRDEHLMS QLRCENLVMD IRSNGDDFSI  300
GDNNSNHVAS DFIRRLI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013584743.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584743.10.0PREDICTED: GATA transcription factor 9-like
SwissprotO826321e-161GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A0D3A2F20.0A0A0D3A2F2_BRAOL; GATA transcription factor
STRINGBo1g008780.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56822749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-138GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]