PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013584728.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 281aa    MW: 32532.6 Da    PI: 7.6807
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013584728.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.53e-171150342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    i n+s r+ tf kR++g +KK +ELSvLC+++++ +i+s+
  XP_013584728.1 11 ITNDSMRKSTFNKRKKGFFKKIHELSVLCGIQACAVIYSP 50
                    89************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.4E-23160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.353149IPR002100Transcription factor, MADS-box
CDDcd002662.03E-33285No hitNo description
SuperFamilySSF554554.58E-24295IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-8323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-161150IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MTRKKLNISY ITNDSMRKST FNKRKKGFFK KIHELSVLCG IQACAVIYSP FSSTPDVWPS  60
NSEAKKVVEK FEEIPKIDQE KKMVNHEGFL RDSITKTREN TIKKMMDNTE SAMNETMFQF  120
LRGRGDMFQL TDKHRDDLCR HIDQHLKELY HHRKLILNQS HLEYGESSSA ANAMIQPAAI  180
AEEGSSPFPN PDAFNTARPV NELWALENNY PPAASDQQGY YQMTSPKFVG YPNVAQDGNY  240
NLTHNQNHQQ EELLVSQMMN NSNQVRFPMM DDNNRCNYHQ P
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013584728.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584728.10.0PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A0D3CMG90.0A0A0D3CMG9_BRAOL; Uncharacterized protein
STRINGBo5g145010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.14e-94M-type_MADS family protein